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Re: [biordf] DBpedia-OBO mapping, additions to HCLS KB

From: Chris Mungall <cjm@berkeleybop.org>
Date: Thu, 16 Apr 2009 08:49:23 -0700
To: "Matthias Samwald" <samwald@gmx.at>
Message-Id: <C8750437-3B13-49C3-9915-8A6C387CC3CC@berkeleybop.org>
Cc: "public-semweb-lifesci" <public-semweb-lifesci@w3.org>

On Apr 16, 2009, at 4:06 AM, Matthias Samwald wrote:

> __ DBpedia - OBO mapping __
>
> I have created a script that generates a mapping between OBO  
> ontologies and DBpedia, based on cross-references to Wikipedia  
> contained in some OBO ontologies. This amounts to a meager ~430  
> mapping relations. Wikipedia references do not seem to be that  
> popular in OBO ontologies after all.

GO alone has ~800 -- think you must have missed some!

> Further information, script and mapping file are available at:
> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/DBpedia_to_OBO_mapping
>
> Further OBO - DBpedia mappings will be based on NLP.
>
> __ Additions to HCLS knowledge base __
>
> I have also added two new graphs to the DERI HCLS knowledge base.  
> One contains the OBO-DBpedia mapping described above, the other  
> contains the RDFa statements from the aTags pastebin, this graph is  
> updated from the changing source document periodically.
>
> See
> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/DERI_HCLS_KB
>
> The synchronisation with the aTags pastebin is accomplished with the  
> crawler feature [1] of Virtuoso. It periodically visits the HTML  
> page, reads the RDFa and updates the graph in the knowledge base. I  
> guess we could extend the use of this feature to other datasets  
> generated by HCLS IG participants and make updating the HCLS  
> knowledge base more dynamic than it currently is.
>
> [1] http://docs.openlinksw.com/virtuoso/rdfinsertmethods.html#rdfinsertmethodvirtuosocrawler
>
> Cheers,
> Matthias Samwald
>
> DERI Galway, Ireland
> http://deri.ie/
>
> Konrad Lorenz Institute for Evolution & Cognition Research, Austria
> http://kli.ac.at/
>
>
>
>
Received on Thursday, 16 April 2009 15:50:18 UTC

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