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Re: cell types, brain regions mentioned in gensat

From: Alan Ruttenberg <alanruttenberg@gmail.com>
Date: Fri, 2 Mar 2007 17:15:23 -0500
Message-Id: <5EDC2031-8E77-4BC0-BCA5-7D57956CA4D1@gmail.com>
Cc: "Nigam Shah" <nigam@stanford.edu>, "'kc28 Cheung'" <kei.cheung@yale.edu>, "'June Kinoshita'" <junekino@media.mit.edu>, "'Gwen Wong'" <wonglabow@verizon.net>, "'Donald Doherty'" <donald.doherty@brainstage.com>, <public-semweb-lifesci@w3.org>
To: William Bug <William.Bug@DrexelMed.edu>

Don't recall doing this, though it's certainly possible that I've  
forgotten.
Just to clarify, each of these lines is for a brain region, not for  
an image.
If you want to do this later this evening with me, give me a call at  
home after about 10.
-Alan

On Mar 2, 2007, at 5:10 PM, William Bug wrote:

> Alan,
>
> Didn't you and I review this already at the ABA site.
>
> All one would need to do is bring up one of these images at the ABA  
> site, go through the "noodling" we did, and look at the  
> corresponding entries in the spreadsheet to match up a "meaning" to  
> each column (probably nearly all those columns).
>
> Cheers,
> Bill
>
> On Mar 2, 2007, at 2:15 PM, Nigam Shah wrote:
>
>>> BTW, if someone has a theory of what the other number in
>>> ontology.xls are, I'm all ears.
>>
>> Okay, pure guesses:
>>
>> Line 4 = Cerebral
>> cortex,CTX,CH,176,255,184,3,85,4141526,61.647,29.999,33.711
>>
>> 176,255,184 seem like RGB values (they all range from 2 to 255) for
>> that region in the image.
>> 3 is a serial number or internal id.
>> 85 - no clue
>> 4141526 - no clue
>> 61.647,29.999,33.711 seem like 3D voxel coordinates.
>>
>> --Nigam.
>>
>
> Bill Bug
> Senior Research Analyst/Ontological Engineer
>
> Laboratory for Bioimaging  & Anatomical Informatics
> www.neuroterrain.org
> Department of Neurobiology & Anatomy
> Drexel University College of Medicine
> 2900 Queen Lane
> Philadelphia, PA    19129
> 215 991 8430 (ph)
> 610 457 0443 (mobile)
> 215 843 9367 (fax)
>
>
> Please Note: I now have a new email - William.Bug@DrexelMed.edu
>
>
>
>
Received on Friday, 2 March 2007 22:16:23 GMT

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