- From: <jbarkley@nist.gov>
- Date: Mon, 31 Jul 2006 15:27:05 -0400
- To: Dan Connolly <connolly@w3.org>
- Cc: Sean Martin <sjmm@us.ibm.com>, public-semweb-lifesci@w3.org, Alan Ruttenberg <alanruttenberg@gmail.com>, Noah Mendelsohn <noah_mendelsohn@us.ibm.com>, "Henry S. Thompson" <ht@inf.ed.ac.uk>
dan,
I recall reading that the PDB Resolver is offline pending
upgrades.
You might try urn:lsid:gdb.org:GenomicSegment:GDB132938
which does work with the BioPathways Resolver:
http://lsid.biopathways.org/resolver/urn:lsid:gdb.org:Genom
icSegment:GDB132938
jb
Quoting Dan Connolly <connolly@w3.org>:
>
> In today's call, I learned a bit about how LSID lookup
> works:
>
> (1) try to find an SRV record using the domain in the
> LSID
> (2) fall back to a DDDS lookup and NAPTR and such
>
> Option (2) depends on some NAPTR stuff in the "arpa"
> parts
> of DNS space that OMG is expected to install but hasn't
> gotten around to, largely for lack of urgent need, I
> gather.
>
> I'm trying to verify my understanding from some code.
> I found some perl code[2], and I got it installed
> with "All tests successful." But when I run it,
> using an example from the LSID spec[1]:
>
> URN:LSID:rcsb.org:PDB:1D4X:22
>
> I get "Unable to resolve authority to SRV record:
> NXDOMAIN".
>
>
> Any clues? A full trace is below:
>
> > ~/src/lsid-perl-1.1.4$ perl
> examples/client/lsid_client.pl
> > URN:LSID:rcsb.org:PDB:1D4X:22
> Client settings:
> Cleaning cache:
> no
>
> LSID Given:
> URN:LSID:rcsb.org:PDB:1D4X:22
>
> Canonicalized LSID:
> urn:lsid:rcsb.org:PDB:1D4X:22
>
> Unable to resolve authority.
> -> Unable to resolve authority to SRV record: NXDOMAIN
>
> Stack trace at LS/Locator.pm line 230
>
> LS::Locator::resolveAuthority('LS::Locator=HASH
(0x824e900)',
> 'LS::ID=SCALAR(0x823f7cc)') called at
> LS/Client/BasicResolver.pm line
> 138
>
> LS::Client::BasicResolver::resolve
('LS::Client::BasicResolver=HASH(0x824e4b0)',
> 'lsid', 'LS::ID=SCALAR(0x823f7cc)') called at
> examples/client/lsid_client.pl line 165
> main::resolveLSID('LS::ID=SCALAR(0x823f7cc)',
> 'undef', 'undef')
> called at examples/client/lsid_client.pl line 125
>
>
> Stack trace at LS/Client/BasicResolver.pm line 143
>
> LS::Client::BasicResolver::resolve
('LS::Client::BasicResolver=HASH(0x824e4b0)',
> 'lsid', 'LS::ID=SCALAR(0x823f7cc)') called at
> examples/client/lsid_client.pl line 165
> main::resolveLSID('LS::ID=SCALAR(0x823f7cc)',
> 'undef', 'undef')
> called at examples/client/lsid_client.pl line 125
>
> >
> [1] http://www.omg.org/cgi-bin/doc?dtc/04-05-01
> [2]
> http://easynews.dl.sourceforge.net/sourceforge/lsid/lsid-
perl-1.1.4.tar.gz
> <- http://lsid.sourceforge.net/
>
> --
> Dan Connolly, W3C http://www.w3.org/People/Connolly/
> D3C2 887B 0F92 6005 C541 0875 0F91 96DE 6E52 C29E
>
>
>
Received on Monday, 31 July 2006 19:27:24 UTC