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Re: [OWG] Telecon

From: Brian Gilman <gilmanb@mac.com>
Date: Tue, 21 Feb 2006 11:55:49 -0500
Message-Id: <A29F522E-74B2-4DCA-A4A0-BFCCA6CDE25D@mac.com>
Cc: Alfredo Morales <Alfredo.Morales@cerebra.com>, public-semweb-lifesci <public-semweb-lifesci@w3.org>
To: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>

Yep,

	The dates/times are available. Just let me know the final time so I  
can request it.

						Best,

							-B
--
Brian Gilman
President Panther Informatics Inc.
E-Mail: gilmanb@pantherinformatics.com
         gilmanb@jforge.net
AIM: gilmanb1

01000010 01101001 01101111
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01100011 01101001 01100001
01101110



On Feb 21, 2006, at 11:45 AM, Kashyap, Vipul wrote:

>
> As per current constraints put forth by the respondents, the two  
> likely days
> that are emerging are Tuesdays and Wednesdays...
>
> Will get back to you on that asap...
>
> In the meanwhile, just wanted to make sure that Tuesdays and  
> Wednesdays 11:00am
> - 12:00pm are available..
>
> Thanks,
>
> ---Vipul
>
> =======================================
> Vipul Kashyap, Ph.D.
> Senior Medical Informatician
> Clinical Informatics R&D, Partners HealthCare System
> Phone: (781)416-9254
> Cell: (617)943-7120
> http://www.partners.org/cird/staff.asp?stAb=vik
>
> To keep up you need the right answers; to get ahead you need the  
> right questions
>
> ---John Browning and Spencer Reiss, Wired 6.04.95
>
>> -----Original Message-----
>> From: Brian Gilman [mailto:gilmanb@mac.com]
>> Sent: Tuesday, February 21, 2006 10:42 AM
>> To: Alfredo Morales
>> Cc: Kashyap, Vipul; public-semweb-lifesci
>> Subject: Re: [OWG] Telecon
>>
>> Hello Guys,
>>
>> 	Was there a resolution on the date(s) time(s) for this conference
>> call?
>>
>> 							-B
>> --
>> Brian Gilman
>> President Panther Informatics Inc.
>> E-Mail: gilmanb@pantherinformatics.com
>>          gilmanb@jforge.net
>> AIM: gilmanb1
>>
>> 01000010 01101001 01101111
>> 01001001 01101110 01100110
>> 01101111 01110010 01101101
>> 01100001 01110100 01101001
>> 01100011 01101001 01100001
>> 01101110
>>
>>
>>
>> On Feb 21, 2006, at 8:53 AM, Alfredo Morales wrote:
>>
>>>
>>> Earlier in the week would work better for me (Monday or Tuesday) -
>>> rest
>>> of the week seems to be unpredictable most of the times. 11:00am EST
>>> will work in the immediate future.
>>>
>>> -----Original Message-----
>>> From: Kashyap, Vipul [mailto:VKASHYAP1@PARTNERS.ORG]
>>> Sent: Monday, February 20, 2006 12:04 PM
>>> To: public-semweb-lifesci
>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;  
>>> Alfredo
>>> Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark Musen;  
>>> Susie
>>> Stephens; helen.chen@agfa.com; Alan Rector
>>> Subject: [OWG] Telecon
>>>
>>>
>>> Hi,
>>>
>>> Would like to schedule a teleconference to discuss the project plan
>>> and
>>> short term/long term deliverables.
>>>
>>> Would like to schedule it initially as a weekly call for an hour
>>> around
>>> 11am Eastern (as this works very well for people on the West  
>>> Coast and
>>> Europe) so that we can make rapid progress. As things get finalized
>>> and
>>> stable, we can then reduce the frequency of the calls.
>>>
>>> Please let me know the days which will work for you guys (Tuesday -
>>> Friday).
>>>
>>> Thanks and Regards,
>>>
>>> ---Vipul
>>>
>>>> -----Original Message-----
>>>> From: Kashyap, Vipul
>>>> Sent: Monday, February 13, 2006 5:53 PM
>>>> To: 'public-semweb-lifesci'
>>>> Cc: 'John Madden'; 'Vinay K. Chaudhri'; 'wangxiao@musc.edu';
>>>> 'duncan.hull@cs.man.ac.uk'; 'Robert Stevens'; 'Amit Sheth @ LSDIS';
>>>> 'Alfredo Morales'; Ullman-Cullere, Mollie; 'ray.hookway@hp.com';
>>>> 'Mark
>>>
>>>> Musen'; 'Susie Stephens'; 'helen.chen@agfa.com'; 'Alan Rector';
>>>> Kashyap, Vipul
>>>> Subject: RE: Ontology Working Group Proposal Draft
>>>>
>>>>
>>>> Hi,
>>>>
>>>> A revised version of the Ontology Task Force Proposal is attached
>>>> with
>>>
>>>> this proposal. A list of proposed tasks with proposed task
>>>> coordinators is as follows. Please let me know if you would rather
>>> coordinate other tasks.
>>>> These is just an initial proposal and I have tried to accommodate
>>>> everyone!
>>>> Collaborators of other collaborating task groups have also been
>>>> identified.
>>>>
>>>> 1. Use Cases Document (3 months):
>>>>    Task Coordinators: Vipul Kashyap, Mollie Ullman-Cullere
>>>>    Collaborating Task Coordinators: Susie Stephens?, Helen Chen?
>>>>
>>>> 2. Ontology Definitions and Best Practices White Paper (1 year):
>>>>    Task Coordinators: Alfredo Morales, Wangxiao, Robert Stevens
>>>>    Collaborating Task Coordinators: Alan Rector?, Helen Chen
>>>>
>>>> 3. Ontology Access and Usage Best Practices Report (6 months):
>>>>    Task Coordinators: Duncan Hall, Ray Hookaway
>>>>    Collaborating Task Coordinators: Mark Musen?, Susie Stephens?,
>>>>                                     Helen Chen?
>>>>
>>>> 4. Creation of Wikis for Collaborative Ontology Development (6
>>> months):
>>>>    Task Coordinators: John Madden, Wangxiao
>>>>    Collaborating Task Coordinators: Mark Musen?
>>>>
>>>> 5. Ontology Maintenance Report (18 months):
>>>>    Task Coordinators: Mark Musen
>>>>    Collaborating Task Coordinators: Vinay Chaudhri, Alan Rector
>>>>
>>>> 6. Ontology Evaluation Report (18 months):
>>>>    Task Coordinators: Mark Musen
>>>>    Collaborating Task Coordinators: Amit Sheth, Alan Rector?
>>>>
>>>> 7. Use Case Solution Design (2 years):
>>>>    Task Coordinators: Vipul Kashyap, John Madden, Alfredo Morales
>>>>    Collaborating Task Coordinators: Susie Stephens?
>>>>
>>>> Please let me have your comments, feedback and suggestions on the
>>>> task
>>>
>>>> breakdown and assignments.
>>>>
>>>> We also need to have our own teleconference, maybe the week after
>>>> February 20th, say February 27th. Let me know if that day works for
>>> you guys.
>>>>
>>>> Cheers,
>>>>
>>>> ---Vipul
>>>>
>>>>> -----Original Message-----
>>>>> From: Miller, Michael D (Rosetta)
>>>>> [mailto:Michael_Miller@Rosettabio.com]
>>>>> Sent: Friday, February 03, 2006 6:13 PM
>>>>> To: Kashyap, Vipul; public-semweb-lifesci
>>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;
>>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark
>>>>> Musen
>>>>> Subject: RE: Ontology Working Group Proposal Draft
>>>>>
>>>>> Hi All,
>>>>>
>>>>> Overall, it looks like a nice formulation.  I especially like the
>>>>> emphasis in practical usage.
>>>>>
>>>>> For point 2, there is an additional class of ontologies for
>>>>> annotating life science studies/investigations/experiments for
>>>>> purposes of publication and reproducibility.
>>>>>
>>>>> For microarray experiments, several major scientific journals,
>>>>> including the Nature group, The Lancet, Cell and EMBO journal
>>>>> adopted MIAME recommendations and submission of the experiment  
>>>>> to a
>>>>> repository (GEO or
>>>>> ArrayExpress) as a requirement for publication of microarray
>>>>> experiments.
>>>>>
>>>>> MAGE-OM and MAGE-ML, the OMG Gene Expression specification
>>>>> (http://www.omg.org/technology/documents/formal/ 
>>>>> gene_expression.htm)
>>>>> , were developed as a format for describing a microarray  
>>>>> experiment
>>>>> and the MGED Ontology
>>>>> (http://mged.sourceforge.net/ontologies/index.php) was  
>>>>> developed for
>>>
>>>>> use in annotating MAGE-ML documents.  It is actually getting  
>>>>> used a
>>>>> great deal.
>>>>>
>>>>> There is a follow-up effort, FuGE-OM and FuGE-ML (functional  
>>>>> genomic
>>>>> experiments) that is currently being developed, to broaden the  
>>>>> base
>>>>> to proteomics, genotyping, various -omics, etc. which is also  
>>>>> having
>>>
>>>>> a similar ontology developed.
>>>>>
>>>>> cheers,
>>>>> Michael
>>>>>
>>>>> Michael Miller
>>>>> Lead Software Developer
>>>>> Rosetta Biosoftware Business Unit
>>>>> www.rosettabio.com
>>>>>
>>>>>
>>>>>> -----Original Message-----
>>>>>> From: public-semweb-lifesci-request@w3.org
>>>>>> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of
>>>>>> Kashyap, Vipul
>>>>>> Sent: Friday, February 03, 2006 2:27 PM
>>>>>> To: public-semweb-lifesci
>>>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;
>>>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com;
>>>>>> Kashyap, Vipul; Mark Musen
>>>>>> Subject: Ontology Working Group Proposal Draft
>>>>>>
>>>>>>
>>>>>>
>>>>>> Hi,
>>>>>>
>>>>>> The draft proposal for the Ontology Working Sub-Group is attached
>>>>>> with this e-mail.
>>>>>>
>>>>>> I recognize that this might need to be scoped down a little bit.
>>>>>> Have tried to identify collaboration points with the other
>>>>>> sub-groups. The proposal identifies "lead" parties for each of  
>>>>>> the
>>>
>>>>>> deliverables.
>>>>>>
>>>>>> This is a draft and any feedback and suggestions are most  
>>>>>> welcome.
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> ---Vipul
>>>>>>
>>>>>> =======================================
>>>>>> Vipul Kashyap, Ph.D.
>>>>>> Senior Medical Informatician
>>>>>> Clinical Informatics R&D, Partners HealthCare System
>>>>>> Phone: (781)416-9254
>>>>>> Cell: (617)943-7120
>>>>>> http://www.partners.org/cird/staff.asp?stAb=vik
>>>>>>
>>>>>> To keep up you need the right answers; to get ahead you need the
>>>>>> right questions ---John Browning and Spencer Reiss, Wired 6.04.95
>>>>>>
>>>>>>> -----Original Message-----
>>>>>>> From: public-semweb-lifesci-request@w3.org
>>>>>> [mailto:public-semweb-lifesci-
>>>>>>> request@w3.org]
>>>>>>> Sent: Wednesday, August 11, 2004 10:35 AM
>>>>>>> To: Kashyap, Vipul
>>>>>>> Subject: Re: subscribe
>>>>>>>
>>>>>>> You have added to the subscriber list of:
>>>>>>>
>>>>>>> 	public-semweb-lifesci@w3.org
>>>>>>>
>>>>>>> the following mail address:
>>>>>>>
>>>>>>> 	vkashyap1@partners.org
>>>>>>>
>>>>>>> By default, copies of your own submissions will be returned.
>>>>>>>
>>>>>>> This is an automated subscription mechanism.  For your
>>>>>> verification, a
>>>>>>> transcript of the original subscription request is included
>>> below.
>>>>>>>
>>>>>>> If the wrong address has been subscribed and you seem to be
>>>>>> unable to fix
>>>>>>> it
>>>>>>> yourself, reply to this message now (quoting it entirely
>>>>>> (for diagnostic
>>>>>>> purposes), and of course adding any comments you see fit).
>>>>>>>
>>>>>>> --
>>>>>>>> From VKASHYAP1@PARTNERS.ORG Wed Aug 11 14:34:41 2004
>>>>>>>> Received: from dr-nick.w3.org ([18.29.1.73])
>>>>>>>> 	by frink.w3.org with esmtp (Exim 4.34)
>>>>>>>> 	id 1BuuBd-0000Az-F9
>>>>>>>> 	for public-semweb-lifesci-request@listhub.w3.org; Wed,
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>>>>>>> helo=PHSXCHICI3.partners.org)
>>>>>>>> 	by dr-nick.w3.org with esmtp (Exim 4.32)
>>>>>>>> 	id 1BuuBd-0008Gk-Br
>>>>>>>> 	for public-semweb-lifesci-request@w3.org; Wed, 11 Aug
>>>>>> 2004 10:34:41
>>>>>>> -0400
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>>>>>>>> Message-ID:
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>>>>>>>>
>>>>>>>> From: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>
>>>>>>>> To: public-semweb-lifesci-request@w3.org
>>>>>>>> Subject: subscribe
>>>>>>>> Date: Wed, 11 Aug 2004 10:34:01 -0400
>>>>>>>> MIME-Version: 1.0
>>>>>>>> X-Mailer: Internet Mail Service (5.5.2657.72)
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>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> ====================================================
>>>>>>>>
>>>>>>>> Vipul Kashyap, PhD
>>>>>>>>
>>>>>>>> Senior Medical Informatician, Clinical Knowledge Management
>>>>>>>>
>>>>>>>> Partners HealthCare Systems, Clinical Informatics R&D
>>>>>>>>
>>>>>>>> Work: (781)416-9254
>>>>>>>>
>>>>>>>> Mobile: (617)943-7120
>>>>>>>>
>>>>>>>> Fax: (781)416-8913
>>>>>>>>
>>>>>>>> Email: vkashyap1@partners.org <mailto:vkashyap1@partners.org>
>>>>>>>>
>>>>>>>> Web: http://www.partners.org/cird/staff.asp?stAb=vik
>>>>>>>> <http://www.partners.org/cird/staff.asp?stAb=vik>
>>>>>>>>
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>>>>>> Roman"><span =
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>>>>>>> 10.0pt'>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3
>>>>>> D=3D=3D=3D=3
>>>>>>> D=
>>>>>>>
>>>>>>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
>>>>>> 3D=3D=3D=3D=
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>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
>>>>>>>> style=3D'font-size:
>>>>>>>> 10.0pt'>Vipul Kashyap, PhD<o:p></o:p></span></font></p>
>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
>>>>>>>> style=3D'font-size:
>>>>>>>> 10.0pt'>Senior Medical Informatician, Clinical Knowledge =
>>>>>>>> Management<o:p></o:p></span></font></p>
>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
>>>>>>>> style=3D'font-size:
>>>>>>>> 10.0pt'>Partners HealthCare Systems, Clinical Informatics =
>>>>>>>> R&amp;D<o:p></o:p></span></font></p>
>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
>>>>>>>> style=3D'font-size:
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>>>>>>>
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>>>>>> t1:place><f=
>>>>>>>> ont
>>>>>>>> size=3D2><span style=3D'font-size:10.0pt'>: =
>>>>>>>> (617)943-7120<o:p></o:p></span></font></p>
>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
>>>>>>>> style=3D'font-size:
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>>>>>>>>
>>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>>> Roman"><span =
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>>>>>>> href=3D"http://www.partners.org/cird/staff.asp?stAb=3Dvik">ht
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>>>
>>>
>
Received on Tuesday, 21 February 2006 16:56:03 GMT

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