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Re: [OWG] Telecon

From: Alan Ruttenberg <alanruttenberg@gmail.com>
Date: Tue, 21 Feb 2006 11:47:46 -0500
Message-Id: <7B5BE822-8441-4C3A-AFAC-1DCB5BB1C1E6@gmail.com>
Cc: "public-semweb-lifesci" <public-semweb-lifesci@w3.org>, "John Madden" <john.madden@duke.edu>, "Vinay K. Chaudhri" <Vinay.Chaudhri@sri.com>, <wangxiao@musc.edu>, <duncan.hull@cs.man.ac.uk>, "Robert Stevens" <robert.stevens@manchester.ac.uk>, "Amit Sheth @ LSDIS" <amit@cs.uga.edu>, "Alfredo Morales" <Alfredo.Morales@cerebra.com>, "Ullman-Cullere, Mollie" <MULLMANCULLERE@PARTNERS.ORG>, <ray.hookway@hp.com>, "Mark Musen" <musen@stanford.edu>, "Susie Stephens" <susie.stephens@oracle.com>, <helen.chen@agfa.com>, "Alan Rector" <rector@cs.man.ac.uk>
To: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>

Hi,
I'm interested in calling in, and since I am also on the BioRDF call  
I'd prefer it not overlap that time.
Thanks,
Alan

On Feb 20, 2006, at 12:37 PM, Kashyap, Vipul wrote:

>
>
> In giving your choices, let me know if you prefer Monday 11am -  
> 12pm Eastern.
> BioRDF is scheduled on that day and wanted to avoid clashes on that
> day. We may choose Monday if there isn't an overlap between OWG and  
> BioRDF
> participants.
>
> Of course, I am assuming that the Zakim teleconference bridge can  
> host multiple
> telecons at the same time.
>
> Thanks,
>
> ---Vipul
>
>> -----Original Message-----
>> From: public-semweb-lifesci-request@w3.org [mailto:public-semweb- 
>> lifesci-
>> request@w3.org] On Behalf Of Kashyap, Vipul
>> Sent: Monday, February 20, 2006 12:04 PM
>> To: public-semweb-lifesci
>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS; Alfredo
>> Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark Musen;  
>> Susie
>> Stephens; helen.chen@agfa.com; Alan Rector
>> Subject: [OWG] Telecon
>>
>>
>>
>> Hi,
>>
>> Would like to schedule a teleconference to discuss the project  
>> plan and
>> short
>> term/long term deliverables.
>>
>> Would like to schedule it initially as a weekly call for an hour  
>> around
>> 11am
>> Eastern (as this works very well for people on the West Coast and  
>> Europe)
>> so
>> that we can make rapid progress. As things get finalized and  
>> stable, we
>> can then
>> reduce the frequency of the calls.
>>
>> Please let me know the days which will work for you guys (Tuesday -
>> Friday).
>>
>> Thanks and Regards,
>>
>> ---Vipul
>>
>>> -----Original Message-----
>>> From: Kashyap, Vipul
>>> Sent: Monday, February 13, 2006 5:53 PM
>>> To: 'public-semweb-lifesci'
>>> Cc: 'John Madden'; 'Vinay K. Chaudhri'; 'wangxiao@musc.edu';
>>> 'duncan.hull@cs.man.ac.uk'; 'Robert Stevens'; 'Amit Sheth @ LSDIS';
>>> 'Alfredo Morales'; Ullman-Cullere, Mollie; 'ray.hookway@hp.com';  
>>> 'Mark
>>> Musen'; 'Susie Stephens'; 'helen.chen@agfa.com'; 'Alan Rector';  
>>> Kashyap,
>>> Vipul
>>> Subject: RE: Ontology Working Group Proposal Draft
>>>
>>>
>>> Hi,
>>>
>>> A revised version of the Ontology Task Force Proposal is attached  
>>> with
>>> this proposal. A list of proposed tasks with proposed task  
>>> coordinators
>> is
>>> as follows. Please let me know if you would rather coordinate other
>> tasks.
>>> These is just an initial proposal and I have tried to accommodate
>>> everyone!
>>> Collaborators of other collaborating task groups have also been
>>> identified.
>>>
>>> 1. Use Cases Document (3 months):
>>>    Task Coordinators: Vipul Kashyap, Mollie Ullman-Cullere
>>>    Collaborating Task Coordinators: Susie Stephens?, Helen Chen?
>>>
>>> 2. Ontology Definitions and Best Practices White Paper (1 year):
>>>    Task Coordinators: Alfredo Morales, Wangxiao, Robert Stevens
>>>    Collaborating Task Coordinators: Alan Rector?, Helen Chen
>>>
>>> 3. Ontology Access and Usage Best Practices Report (6 months):
>>>    Task Coordinators: Duncan Hall, Ray Hookaway
>>>    Collaborating Task Coordinators: Mark Musen?, Susie Stephens?,
>>>                                     Helen Chen?
>>>
>>> 4. Creation of Wikis for Collaborative Ontology Development (6  
>>> months):
>>>    Task Coordinators: John Madden, Wangxiao
>>>    Collaborating Task Coordinators: Mark Musen?
>>>
>>> 5. Ontology Maintenance Report (18 months):
>>>    Task Coordinators: Mark Musen
>>>    Collaborating Task Coordinators: Vinay Chaudhri, Alan Rector
>>>
>>> 6. Ontology Evaluation Report (18 months):
>>>    Task Coordinators: Mark Musen
>>>    Collaborating Task Coordinators: Amit Sheth, Alan Rector?
>>>
>>> 7. Use Case Solution Design (2 years):
>>>    Task Coordinators: Vipul Kashyap, John Madden, Alfredo Morales
>>>    Collaborating Task Coordinators: Susie Stephens?
>>>
>>> Please let me have your comments, feedback and suggestions on the  
>>> task
>>> breakdown and assignments.
>>>
>>> We also need to have our own teleconference, maybe the week after
>> February
>>> 20th, say February 27th. Let me know if that day works for you guys.
>>>
>>> Cheers,
>>>
>>> ---Vipul
>>>
>>>> -----Original Message-----
>>>> From: Miller, Michael D (Rosetta)
>> [mailto:Michael_Miller@Rosettabio.com]
>>>> Sent: Friday, February 03, 2006 6:13 PM
>>>> To: Kashyap, Vipul; public-semweb-lifesci
>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;  
>>>> Alfredo
>>>> Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark Musen
>>>> Subject: RE: Ontology Working Group Proposal Draft
>>>>
>>>> Hi All,
>>>>
>>>> Overall, it looks like a nice formulation.  I especially like the
>>>> emphasis in practical usage.
>>>>
>>>> For point 2, there is an additional class of ontologies for  
>>>> annotating
>>>> life science studies/investigations/experiments for purposes of
>>>> publication and reproducibility.
>>>>
>>>> For microarray experiments, several major scientific journals,
>> including
>>>> the Nature group, The Lancet, Cell and EMBO journal adopted MIAME
>>>> recommendations and submission of the experiment to a repository  
>>>> (GEO
>> or
>>>> ArrayExpress) as a requirement for publication of microarray
>>>> experiments.
>>>>
>>>> MAGE-OM and MAGE-ML, the OMG Gene Expression specification
>>>> (http://www.omg.org/technology/documents/formal/ 
>>>> gene_expression.htm),
>>>> were developed as a format for describing a microarray  
>>>> experiment and
>>>> the MGED Ontology (http://mged.sourceforge.net/ontologies/ 
>>>> index.php)
>> was
>>>> developed for use in annotating MAGE-ML documents.  It is actually
>>>> getting used a great deal.
>>>>
>>>> There is a follow-up effort, FuGE-OM and FuGE-ML (functional  
>>>> genomic
>>>> experiments) that is currently being developed, to broaden the  
>>>> base to
>>>> proteomics, genotyping, various -omics, etc. which is also having a
>>>> similar ontology developed.
>>>>
>>>> cheers,
>>>> Michael
>>>>
>>>> Michael Miller
>>>> Lead Software Developer
>>>> Rosetta Biosoftware Business Unit
>>>> www.rosettabio.com
>>>>
>>>>
>>>>> -----Original Message-----
>>>>> From: public-semweb-lifesci-request@w3.org
>>>>> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of
>>>>> Kashyap, Vipul
>>>>> Sent: Friday, February 03, 2006 2:27 PM
>>>>> To: public-semweb-lifesci
>>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;
>>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com;
>>>>> Kashyap, Vipul; Mark Musen
>>>>> Subject: Ontology Working Group Proposal Draft
>>>>>
>>>>>
>>>>>
>>>>> Hi,
>>>>>
>>>>> The draft proposal for the Ontology Working Sub-Group is
>>>>> attached with this
>>>>> e-mail.
>>>>>
>>>>> I recognize that this might need to be scoped down a little
>>>>> bit. Have tried to
>>>>> identify collaboration points with the other sub-groups. The
>>>>> proposal identifies
>>>>> "lead" parties for each of the deliverables.
>>>>>
>>>>> This is a draft and any feedback and suggestions are most welcome.
>>>>>
>>>>> Cheers,
>>>>>
>>>>> ---Vipul
>>>>>
>>>>> =======================================
>>>>> Vipul Kashyap, Ph.D.
>>>>> Senior Medical Informatician
>>>>> Clinical Informatics R&D, Partners HealthCare System
>>>>> Phone: (781)416-9254
>>>>> Cell: (617)943-7120
>>>>> http://www.partners.org/cird/staff.asp?stAb=vik
>>>>>
>>>>> To keep up you need the right answers; to get ahead you need
>>>>> the right questions
>>>>> ---John Browning and Spencer Reiss, Wired 6.04.95
>>>>>
>>>>>> -----Original Message-----
>>>>>> From: public-semweb-lifesci-request@w3.org
>>>>> [mailto:public-semweb-lifesci-
>>>>>> request@w3.org]
>>>>>> Sent: Wednesday, August 11, 2004 10:35 AM
>>>>>> To: Kashyap, Vipul
>>>>>> Subject: Re: subscribe
>>>>>>
>>>>>> You have added to the subscriber list of:
>>>>>>
>>>>>> 	public-semweb-lifesci@w3.org
>>>>>>
>>>>>> the following mail address:
>>>>>>
>>>>>> 	vkashyap1@partners.org
>>>>>>
>>>>>> By default, copies of your own submissions will be returned.
>>>>>>
>>>>>> This is an automated subscription mechanism.  For your
>>>>> verification, a
>>>>>> transcript of the original subscription request is included  
>>>>>> below.
>>>>>>
>>>>>> If the wrong address has been subscribed and you seem to be
>>>>> unable to fix
>>>>>> it
>>>>>> yourself, reply to this message now (quoting it entirely
>>>>> (for diagnostic
>>>>>> purposes), and of course adding any comments you see fit).
>>>>>>
>>>>>> --
>>>>>>> From VKASHYAP1@PARTNERS.ORG Wed Aug 11 14:34:41 2004
>>>>>>> Received: from dr-nick.w3.org ([18.29.1.73])
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>>>>>>> 	for public-semweb-lifesci-request@listhub.w3.org; Wed,
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>>>>>>> Message-ID:
>>>>>> <8439A208B822D311B4DD0008C7EAAA0B1391905F@phsexch12.partners.org>
>>>>>>> From: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>
>>>>>>> To: public-semweb-lifesci-request@w3.org
>>>>>>> Subject: subscribe
>>>>>>> Date: Wed, 11 Aug 2004 10:34:01 -0400
>>>>>>> MIME-Version: 1.0
>>>>>>> X-Mailer: Internet Mail Service (5.5.2657.72)
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>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> ====================================================
>>>>>>>
>>>>>>> Vipul Kashyap, PhD
>>>>>>>
>>>>>>> Senior Medical Informatician, Clinical Knowledge Management
>>>>>>>
>>>>>>> Partners HealthCare Systems, Clinical Informatics R&D
>>>>>>>
>>>>>>> Work: (781)416-9254
>>>>>>>
>>>>>>> Mobile: (617)943-7120
>>>>>>>
>>>>>>> Fax: (781)416-8913
>>>>>>>
>>>>>>> Email: vkashyap1@partners.org <mailto:vkashyap1@partners.org>
>>>>>>>
>>>>>>> Web: http://www.partners.org/cird/staff.asp?stAb=vik
>>>>>>> <http://www.partners.org/cird/staff.asp?stAb=vik>
>>>>>>>
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>>>>>>>
>>>>>>> <head>
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>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>> Roman"><span =
>>>>>>> style=3D'font-size:
>>>>>>
>>>>>> 10.0pt'>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3
>>>>> D=3D=3D=3D=3
>>>>>> D=
>>>>>>
>>>>>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
>>>>> 3D=3D=3D=3D=
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>>>>>>>
>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>> Roman"><span =
>>>>>>> style=3D'font-size:
>>>>>>> 10.0pt'>Vipul Kashyap, PhD<o:p></o:p></span></font></p>
>>>>>>>
>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>> Roman"><span =
>>>>>>> style=3D'font-size:
>>>>>>> 10.0pt'>Senior Medical Informatician, Clinical Knowledge =
>>>>>>> Management<o:p></o:p></span></font></p>
>>>>>>>
>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>>> Roman"><span =
>>>>>>> style=3D'font-size:
>>>>>>> 10.0pt'>Partners HealthCare Systems, Clinical Informatics =
>>>>>>> R&amp;D<o:p></o:p></span></font></p>
>>>>>>>
>>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
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>>>>>>> style=3D'font-size:
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>>>>>>>
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>>>>>>
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>>>>> t1:place><f=
>>>>>>> ont
>>>>>>> size=3D2><span style=3D'font-size:10.0pt'>: =
>>>>>>> (617)943-7120<o:p></o:p></span></font></p>
>>>>>>>
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>>>>>>> >
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>>>>>>
>>>>>> href=3D"http://www.partners.org/cird/staff.asp?stAb=3Dvik">ht
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>> =
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>>
>
>
Received on Tuesday, 21 February 2006 16:48:09 GMT

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