W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > February 2006

Re: [OWG] Telecon

From: Brian Gilman <gilmanb@mac.com>
Date: Tue, 21 Feb 2006 11:41:50 -0500
Message-Id: <AE1CF113-565D-403F-BFC1-521903A67C27@mac.com>
Cc: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>, public-semweb-lifesci <public-semweb-lifesci@w3.org>
To: Alfredo Morales <Alfredo.Morales@cerebra.com>

Hello Guys,

	Was there a resolution on the date(s) time(s) for this conference call?

							-B
--
Brian Gilman
President Panther Informatics Inc.
E-Mail: gilmanb@pantherinformatics.com
         gilmanb@jforge.net
AIM: gilmanb1

01000010 01101001 01101111
01001001 01101110 01100110
01101111 01110010 01101101
01100001 01110100 01101001
01100011 01101001 01100001
01101110



On Feb 21, 2006, at 8:53 AM, Alfredo Morales wrote:

>
> Earlier in the week would work better for me (Monday or Tuesday) -  
> rest
> of the week seems to be unpredictable most of the times. 11:00am EST
> will work in the immediate future.
>
> -----Original Message-----
> From: Kashyap, Vipul [mailto:VKASHYAP1@PARTNERS.ORG]
> Sent: Monday, February 20, 2006 12:04 PM
> To: public-semweb-lifesci
> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS; Alfredo
> Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark Musen; Susie
> Stephens; helen.chen@agfa.com; Alan Rector
> Subject: [OWG] Telecon
>
>
> Hi,
>
> Would like to schedule a teleconference to discuss the project plan  
> and
> short term/long term deliverables.
>
> Would like to schedule it initially as a weekly call for an hour  
> around
> 11am Eastern (as this works very well for people on the West Coast and
> Europe) so that we can make rapid progress. As things get finalized  
> and
> stable, we can then reduce the frequency of the calls.
>
> Please let me know the days which will work for you guys (Tuesday -
> Friday).
>
> Thanks and Regards,
>
> ---Vipul
>
>> -----Original Message-----
>> From: Kashyap, Vipul
>> Sent: Monday, February 13, 2006 5:53 PM
>> To: 'public-semweb-lifesci'
>> Cc: 'John Madden'; 'Vinay K. Chaudhri'; 'wangxiao@musc.edu';
>> 'duncan.hull@cs.man.ac.uk'; 'Robert Stevens'; 'Amit Sheth @ LSDIS';
>> 'Alfredo Morales'; Ullman-Cullere, Mollie; 'ray.hookway@hp.com';  
>> 'Mark
>
>> Musen'; 'Susie Stephens'; 'helen.chen@agfa.com'; 'Alan Rector';
>> Kashyap, Vipul
>> Subject: RE: Ontology Working Group Proposal Draft
>>
>>
>> Hi,
>>
>> A revised version of the Ontology Task Force Proposal is attached  
>> with
>
>> this proposal. A list of proposed tasks with proposed task
>> coordinators is as follows. Please let me know if you would rather
> coordinate other tasks.
>> These is just an initial proposal and I have tried to accommodate
>> everyone!
>> Collaborators of other collaborating task groups have also been
>> identified.
>>
>> 1. Use Cases Document (3 months):
>>    Task Coordinators: Vipul Kashyap, Mollie Ullman-Cullere
>>    Collaborating Task Coordinators: Susie Stephens?, Helen Chen?
>>
>> 2. Ontology Definitions and Best Practices White Paper (1 year):
>>    Task Coordinators: Alfredo Morales, Wangxiao, Robert Stevens
>>    Collaborating Task Coordinators: Alan Rector?, Helen Chen
>>
>> 3. Ontology Access and Usage Best Practices Report (6 months):
>>    Task Coordinators: Duncan Hall, Ray Hookaway
>>    Collaborating Task Coordinators: Mark Musen?, Susie Stephens?,
>>                                     Helen Chen?
>>
>> 4. Creation of Wikis for Collaborative Ontology Development (6
> months):
>>    Task Coordinators: John Madden, Wangxiao
>>    Collaborating Task Coordinators: Mark Musen?
>>
>> 5. Ontology Maintenance Report (18 months):
>>    Task Coordinators: Mark Musen
>>    Collaborating Task Coordinators: Vinay Chaudhri, Alan Rector
>>
>> 6. Ontology Evaluation Report (18 months):
>>    Task Coordinators: Mark Musen
>>    Collaborating Task Coordinators: Amit Sheth, Alan Rector?
>>
>> 7. Use Case Solution Design (2 years):
>>    Task Coordinators: Vipul Kashyap, John Madden, Alfredo Morales
>>    Collaborating Task Coordinators: Susie Stephens?
>>
>> Please let me have your comments, feedback and suggestions on the  
>> task
>
>> breakdown and assignments.
>>
>> We also need to have our own teleconference, maybe the week after
>> February 20th, say February 27th. Let me know if that day works for
> you guys.
>>
>> Cheers,
>>
>> ---Vipul
>>
>>> -----Original Message-----
>>> From: Miller, Michael D (Rosetta)
>>> [mailto:Michael_Miller@Rosettabio.com]
>>> Sent: Friday, February 03, 2006 6:13 PM
>>> To: Kashyap, Vipul; public-semweb-lifesci
>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;
>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com; Mark
>>> Musen
>>> Subject: RE: Ontology Working Group Proposal Draft
>>>
>>> Hi All,
>>>
>>> Overall, it looks like a nice formulation.  I especially like the
>>> emphasis in practical usage.
>>>
>>> For point 2, there is an additional class of ontologies for
>>> annotating life science studies/investigations/experiments for
>>> purposes of publication and reproducibility.
>>>
>>> For microarray experiments, several major scientific journals,
>>> including the Nature group, The Lancet, Cell and EMBO journal
>>> adopted MIAME recommendations and submission of the experiment to a
>>> repository (GEO or
>>> ArrayExpress) as a requirement for publication of microarray
>>> experiments.
>>>
>>> MAGE-OM and MAGE-ML, the OMG Gene Expression specification
>>> (http://www.omg.org/technology/documents/formal/gene_expression.htm)
>>> , were developed as a format for describing a microarray experiment
>>> and the MGED Ontology
>>> (http://mged.sourceforge.net/ontologies/index.php) was developed for
>
>>> use in annotating MAGE-ML documents.  It is actually getting used a
>>> great deal.
>>>
>>> There is a follow-up effort, FuGE-OM and FuGE-ML (functional genomic
>>> experiments) that is currently being developed, to broaden the base
>>> to proteomics, genotyping, various -omics, etc. which is also having
>
>>> a similar ontology developed.
>>>
>>> cheers,
>>> Michael
>>>
>>> Michael Miller
>>> Lead Software Developer
>>> Rosetta Biosoftware Business Unit
>>> www.rosettabio.com
>>>
>>>
>>>> -----Original Message-----
>>>> From: public-semweb-lifesci-request@w3.org
>>>> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of
>>>> Kashyap, Vipul
>>>> Sent: Friday, February 03, 2006 2:27 PM
>>>> To: public-semweb-lifesci
>>>> Cc: John Madden; Vinay K. Chaudhri; wangxiao@musc.edu;
>>>> duncan.hull@cs.man.ac.uk; Robert Stevens; Amit Sheth @ LSDIS;
>>>> Alfredo Morales; Ullman-Cullere, Mollie; ray.hookway@hp.com;
>>>> Kashyap, Vipul; Mark Musen
>>>> Subject: Ontology Working Group Proposal Draft
>>>>
>>>>
>>>>
>>>> Hi,
>>>>
>>>> The draft proposal for the Ontology Working Sub-Group is attached
>>>> with this e-mail.
>>>>
>>>> I recognize that this might need to be scoped down a little bit.
>>>> Have tried to identify collaboration points with the other
>>>> sub-groups. The proposal identifies "lead" parties for each of the
>
>>>> deliverables.
>>>>
>>>> This is a draft and any feedback and suggestions are most welcome.
>>>>
>>>> Cheers,
>>>>
>>>> ---Vipul
>>>>
>>>> =======================================
>>>> Vipul Kashyap, Ph.D.
>>>> Senior Medical Informatician
>>>> Clinical Informatics R&D, Partners HealthCare System
>>>> Phone: (781)416-9254
>>>> Cell: (617)943-7120
>>>> http://www.partners.org/cird/staff.asp?stAb=vik
>>>>
>>>> To keep up you need the right answers; to get ahead you need the
>>>> right questions ---John Browning and Spencer Reiss, Wired 6.04.95
>>>>
>>>>> -----Original Message-----
>>>>> From: public-semweb-lifesci-request@w3.org
>>>> [mailto:public-semweb-lifesci-
>>>>> request@w3.org]
>>>>> Sent: Wednesday, August 11, 2004 10:35 AM
>>>>> To: Kashyap, Vipul
>>>>> Subject: Re: subscribe
>>>>>
>>>>> You have added to the subscriber list of:
>>>>>
>>>>> 	public-semweb-lifesci@w3.org
>>>>>
>>>>> the following mail address:
>>>>>
>>>>> 	vkashyap1@partners.org
>>>>>
>>>>> By default, copies of your own submissions will be returned.
>>>>>
>>>>> This is an automated subscription mechanism.  For your
>>>> verification, a
>>>>> transcript of the original subscription request is included
> below.
>>>>>
>>>>> If the wrong address has been subscribed and you seem to be
>>>> unable to fix
>>>>> it
>>>>> yourself, reply to this message now (quoting it entirely
>>>> (for diagnostic
>>>>> purposes), and of course adding any comments you see fit).
>>>>>
>>>>> --
>>>>>> From VKASHYAP1@PARTNERS.ORG Wed Aug 11 14:34:41 2004
>>>>>> Received: from dr-nick.w3.org ([18.29.1.73])
>>>>>> 	by frink.w3.org with esmtp (Exim 4.34)
>>>>>> 	id 1BuuBd-0000Az-F9
>>>>>> 	for public-semweb-lifesci-request@listhub.w3.org; Wed,
>>>> 11 Aug 2004
>>>>> 14:34:41 +0000
>>>>>> Received: from phsxchici3.mgh.harvard.edu ([132.183.130.38]
>>>>> helo=PHSXCHICI3.partners.org)
>>>>>> 	by dr-nick.w3.org with esmtp (Exim 4.32)
>>>>>> 	id 1BuuBd-0008Gk-Br
>>>>>> 	for public-semweb-lifesci-request@w3.org; Wed, 11 Aug
>>>> 2004 10:34:41
>>>>> -0400
>>>>>> Received: by phsxchici3.mgh.harvard.edu with Internet Mail
>>>>>> Service
>>>>> (5.5.2657.72)
>>>>>> 	id <QWPAMSV5>; Wed, 11 Aug 2004 10:34:59 -0400
>>>>>> Message-ID:
>>>>> <8439A208B822D311B4DD0008C7EAAA0B1391905F@phsexch12.partners.org
>>>>>>
>>>>>> From: "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>
>>>>>> To: public-semweb-lifesci-request@w3.org
>>>>>> Subject: subscribe
>>>>>> Date: Wed, 11 Aug 2004 10:34:01 -0400
>>>>>> MIME-Version: 1.0
>>>>>> X-Mailer: Internet Mail Service (5.5.2657.72)
>>>>>> Content-Type: multipart/alternative;
>>>>>> 	boundary="----_=_NextPart_001_01C47FB0.3ED56C84"
>>>>>>
>>>>>> This message is in MIME format. Since your mail reader does not
>>>>> understand
>>>>>> this format, some or all of this message may not be legible.
>>>>>>
>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84
>>>>>> Content-Type: text/plain
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> ====================================================
>>>>>>
>>>>>> Vipul Kashyap, PhD
>>>>>>
>>>>>> Senior Medical Informatician, Clinical Knowledge Management
>>>>>>
>>>>>> Partners HealthCare Systems, Clinical Informatics R&D
>>>>>>
>>>>>> Work: (781)416-9254
>>>>>>
>>>>>> Mobile: (617)943-7120
>>>>>>
>>>>>> Fax: (781)416-8913
>>>>>>
>>>>>> Email: vkashyap1@partners.org <mailto:vkashyap1@partners.org>
>>>>>>
>>>>>> Web: http://www.partners.org/cird/staff.asp?stAb=vik
>>>>>> <http://www.partners.org/cird/staff.asp?stAb=vik>
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84
>>>>>> Content-Type: text/html
>>>>>> Content-Transfer-Encoding: quoted-printable
>>>>>>
>>>>>> <html xmlns:v=3D"urn:schemas-microsoft-com:vml" =
>>>>>> xmlns:o=3D"urn:schemas-microsoft-com:office:office" =
>>>>>> xmlns:w=3D"urn:schemas-microsoft-com:office:word" =
>>>>>> xmlns:st1=3D"urn:schemas-microsoft-com:office:smarttags" =
>>>>>> xmlns=3D"http://www.w3.org/TR/REC-html40">
>>>>>>
>>>>>> <head>
>>>>>> <META HTTP-EQUIV=3D"Content-Type" CONTENT=3D"text/html; =
>>>>>> charset=3DUS-ASCII">
>>>>>>
>>>>>>
>>>>>> <meta name=3DGenerator content=3D"Microsoft Word 11
>>>> (filtered medium)">
>>>>>> <o:SmartTagType =
>>>>>> namespaceuri=3D"urn:schemas-microsoft-com:office:smarttags"
>>>>>> name=3D"City"/>
>>>>>> <o:SmartTagType =
>>>>>> namespaceuri=3D"urn:schemas-microsoft-com:office:smarttags"
>>>>>> name=3D"place"/>
>>>>>> <!--[if !mso]>
>>>>>> <style>
>>>>>> st1\:*{behavior:url(#default#ieooui) } </style> <![endif]-->
>>>>>> <style>
>>>>>> <!--
>>>>>> /* Font Definitions */
>>>>>> @font-face
>>>>>> 	{font-family:"Bookman Old Style";
>>>>>> 	panose-1:2 5 6 4 5 5 5 2 2 4;}
>>>>>> /* Style Definitions */
>>>>>> p.MsoNormal, li.MsoNormal, div.MsoNormal
>>>>>> 	{margin:0in;
>>>>>> 	margin-bottom:.0001pt;
>>>>>> 	font-size:12.0pt;
>>>>>> 	font-family:"Times New Roman";} a:link,
> span.MsoHyperlink
>>>>>> 	{color:blue;
>>>>>> 	text-decoration:underline;}
>>>>>> a:visited, span.MsoHyperlinkFollowed
>>>>>> 	{color:purple;
>>>>>> 	text-decoration:underline;}
>>>>>> span.EmailStyle17
>>>>>> 	{mso-style-type:personal-compose;
>>>>>> 	font-family:Arial;
>>>>>> 	color:windowtext;}
>>>>>> @page Section1
>>>>>> 	{size:8.5in 11.0in;
>>>>>> 	margin:1.0in 1.25in 1.0in 1.25in;}
>>>>>> div.Section1
>>>>>> 	{page:Section1;}
>>>>>> -->
>>>>>> </style>
>>>>>> <!--[if gte mso 9]><xml>
>>>>>> <o:shapedefaults v:ext=3D"edit" spidmax=3D"1026" />
>>>>>> </xml><![endif]--><!--[if gte mso 9]><xml>  <o:shapelayout
>>>>>> v:ext=3D"edit">
>>>>>>  <o:idmap v:ext=3D"edit" data=3D"1" />
>>>>>> </o:shapelayout></xml><![endif]-->
>>>>>> </head>
>>>>>>
>>>>>> <body lang=3DEN-US link=3Dblue vlink=3Dpurple>
>>>>>>
>>>>>> <div class=3DSection1>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3DArial><span =
>>>>>> style=3D'font-size:10.0pt;
>>>>>> font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3DArial><span =
>>>>>> style=3D'font-size:10.0pt;
>>>>>> font-family:Arial'><o:p>&nbsp;</o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>
>>>>> 10.0pt'>=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3
>>>> D=3D=3D=3D=3
>>>>> D=
>>>>>
>>>>> =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=
>>>> 3D=3D=3D=3D=
>>>>>> =3D=3D=3D=3D=3D=3D<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Vipul Kashyap, PhD<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Senior Medical Informatician, Clinical Knowledge =
>>>>>> Management<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Partners HealthCare Systems, Clinical Informatics =
>>>>>> R&amp;D<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Work: (781)416-9254<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><st1:place w:st=3D"on"><st1:City
>>>> w:st=3D"on"><font =
>>>>>> size=3D2
>>>>>>  face=3D"Times New Roman"><span =
>>>>>
>>>>> style=3D'font-size:10.0pt'>Mobile</span></font></st1:City></s
>>>> t1:place><f=
>>>>>> ont
>>>>>> size=3D2><span style=3D'font-size:10.0pt'>: =
>>>>>> (617)943-7120<o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Fax: (781)416-8913</span></font><o:p></o:p></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Email: <a =
>>>>>> href=3D"mailto:vkashyap1@partners.org">vkashyap1@partners.org</
>>>>>> a>
>>>>>> </span></font><o:p></o:p></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D2 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt'>Web: <a =
>>>>>
>>>>> href=3D"http://www.partners.org/cird/staff.asp?stAb=3Dvik">ht
>>>> tp://www.pa=
>>>>>> rtners.org/cird/staff.asp?stAb=3Dvik</a>
>>>>>> </span></font><font size=3D2 face=3D"Bookman Old Style"><span =
>>>>>> style=3D'font-size:
>>>>>> 10.0pt;font-family:"Bookman Old
>>>>>> Style"'>&nbsp;</span></font><font = size=3D2><span
>>>>>> style=3D'font-size:10.0pt'><o:p></o:p></span></font></p>
>>>>>>
>>>>>> <p class=3DMsoNormal><font size=3D3 face=3D"Times New
>>>> Roman"><span =
>>>>>> style=3D'font-size:
>>>>>> 12.0pt'><o:p>&nbsp;</o:p></span></font></p>
>>>>>>
>>>>>> </div>
>>>>>>
>>>>>> </body>
>>>>>>
>>>>>> </html>
>>>>>>
>>>>>> ------_=_NextPart_001_01C47FB0.3ED56C84--
>>>>>>
>>>>
>
>
Received on Tuesday, 21 February 2006 16:42:06 GMT

This archive was generated by hypermail 2.3.1 : Tuesday, 26 March 2013 18:00:42 GMT