W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > May 2015

Re: Good, up-to-date tutorial on OWL 2 and Protege for Biomedical domain?

From: Oliver Ruebenacker <curoli@gmail.com>
Date: Tue, 5 May 2015 10:37:05 -0400
Message-ID: <CAA=X4ODW1gHuox+uh8vri2VfHx5En4mQJzKv1uAFjt9UQa5YuQ@mail.gmail.com>
To: Matthias Samwald <matthias.samwald@meduniwien.ac.at>
Cc: w3c semweb HCLS <public-semweb-lifesci@w3.org>

  I tried Protege and TopBraid composer and found both unhelpful. I either
write Turtle with a text editor or write Scala code on top of Sesame that
creates the RDF I need, and I find that to be so much more efficient.
Banana RDF is worth looking into.

  The challenge of building ontologies is not technical, but

  I'd show them some real-world examples of ontologies like BioPAX, SBO,
GO, etc.

     Best, Oliver

On Sat, May 2, 2015 at 5:24 AM, Matthias Samwald <
matthias.samwald@meduniwien.ac.at> wrote:

> Dear all,
> I'm about to teach a course to medical informatics students that have
> never used OWL before. Are there any good, up-to-date tutorials or even
> course materials on OWL 2, biomedical ontology building and Protege that
> you could recommend? I was surprised to find that most publicly available
> resources have gathered quite a bit of dust (focused on OWL 1, old versions
> of Protege), or are not very accessible. I'd be especially interested in
> materials that avoid using the Pizza ontology ;)
> Thanks,
> Matthias
> --
> Assistant Professor
> Center for Medical Statistics, Informatics, and Intelligent Systems
> Medical University of Vienna
> http://samwald.info/

Oliver Ruebenacker
Solutions Architect at Altisource Labs <http://www.altisourcelabs.com/>
Be always grateful, but never satisfied.
Received on Tuesday, 5 May 2015 14:37:32 UTC

This archive was generated by hypermail 2.3.1 : Saturday, 16 May 2015 00:34:44 UTC