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Re: Franco du Preez @ Systems Biology Task Force - Wed 28th Mar at 11AM EDT

From: Helena Deus <helenadeus@gmail.com>
Date: Wed, 28 Mar 2012 15:49:35 +0100
Message-ID: <CAPkJ_9=2hk1YdWU4j7cFXzBRFXTkDcS7oAtnn7_Uu621qKFDBQ@mail.gmail.com>
To: W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, Jonas S Almeida <jalmeida@uab.edu>, Laleh.Kazemzadeh@deri.org
Starts in 20 minutes

Here is the link to webex -
https://deri.webex.com/deri/e.php?AT=WMI&EventID=206349667&PW=a36bcc4d62031d02687d607675&RT=MTgjMjE%3D


You can call (directions below) or chose "call using computer ":

1. 0800-051-3810 (Call-in toll-free number (UK))
   +44-20-310-64804 (Call-in toll number (UK))

2. Enter the access code:
    302 658 63 #   (Host access code)
    302 820 94 #   (Attendee access code)
3. Enter your Attendee ID:
   3 #

Hopefully this will work - if not, we will fall back into w3c numbers:

 Dial-In #: +1.617.761.6200 (Cambridge, MA)
 Dial-In #: +33.4.26.46.79.03 (Paris, France)
 Dial-In #: +44.203.318.0479 (London, UK)

*Please* also log in to w3c irc ( irc.w3.org ) indicating #hcls as channel
so that we can log all the participants

Thanks and talk to you in a few mins!
Helena



On Tue, Mar 27, 2012 at 2:56 PM, Helena Deus <helenadeus@gmail.com> wrote:

> Dear All,
>
> Please join me tomorrow at the Systems Biology Task force, where Franco du
> Preez will give us an overview of the work going on at SysmoDB.
>
> *PLEASE NOTE:* We will attempt to use webex for slide sharing, so I will
> share the webex link on IRC tomorrow.
>
> *OneStop: Access point to SBML, SBGN and MIRIAM compliant annotation for
> users of the SysMO SEEK*
>
> Franco B. Du Preez(1), Stuart Owen(2), Katherine Wolstencroft(2), Olga
> Krebs(3), Wolfgang Müller(3), Carole Goble(2) & Jacky L. Snoep(4)
>
> We have developed an online model constructor and validator called
> OneStop, which provides users of the SysMO SEEK platform with easy access
> to modeling standards such as SBGN, SBML and MIRIAM compliant annotation.
> Key distinctions between OneStop and many existing model constructors
> include a human readable input form as well as live visualization of the
> reaction network during the construction phase in SBGN as well as it being
> an online system, accessible from any machine with a compatible browser.
> Error feedback is provided iteratively at the appropriate sites in the
> model, simplifying the debugging process significantly and guiding the
> efforts of new users in a step by step fashion. OneStop is tightly
> integrated with the JWS Online model repository and simulator and also
> facilitates the import of models from the BioModels database.
>
> 1.Manchester Interdisciplinary Biocentre, University of Manchester, UK
> 2.School of Computer Science, University of Manchester, UK
> 3.Heidelberg Institute for Theoretical Studies (Hits), gGmbH, Germany
> 4.Department of Biochemistry, Stellenbosch University, South Africa
>
>
>
> About the Speaker:
>
> Im a member of the SysMO-DB group at the University of Manchester, which
> is part of a larger consortium studying the Systems Biology of
> MicroOrganisms (SysMO). My work is centered around the modeling aspects of
> the SysMO SEEK platform, such as model curation, model simulation and
> analysis tools and standards, such as SBML, SBGN and MIRIAM compliant
> annotation. My current research relates to the recalibration and reuse of
> existing detailed kinetic models to describe new experimental data.
> *
> *
> *
> *
> *Conference Details
> *Systems Biology
> http://www.w3.org/wiki/HCLSIG/SysBio
>
>  Date of Call: Wednesday March 28 2012
>  Time of Call: 11:00am - 12:00pm EDT
>  Dial-In #: +1.617.761.6200 (Cambridge, MA)
>  Dial-In #: +33.4.26.46.79.03 (Paris, France)
>  Dial-In #: +44.203.318.0479 (London, UK)
>  Participant Access Code: 4257 ("HCLS")
>  IRC Channel: irc.w3.org port 6665 channel #HCLS (see [
> http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see [
> http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
>  Mibbit quick start: Click on [
> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls mibbit]
> for instant IRC access
>  Duration: 1h
>  Convener: Helena F Deus
>
> *Agenda
> ** Franco talk
> * Ideas about next invited speakers
> * Adding more tools and publications to the wiki -
> http://www.w3.org/wiki/HCLSIG/SysBio
> * Next Steps - Identify a small network for proteins as an excuse to start
> exploring the TCGA data
>
>
>
> --
> Helena F. Deus
> Post-Doctoral Researcher at DERI/NUIG
> http://lenadeus.info/
>
>


-- 
Helena F. Deus
Post-Doctoral Researcher at DERI/NUIG
http://lenadeus.info/
Received on Wednesday, 28 March 2012 14:50:24 GMT

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