W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > December 2012

Re: Fwd: [Ops-ttf] Fwd: DrugBank not available?

From: Peter Ansell <ansell.peter@gmail.com>
Date: Wed, 12 Dec 2012 09:18:42 +1000
Message-ID: <CAGYFOCRWc6b6+FUGijNwRETxtgRuKdADWx1351ad9XiHj8_9wg@mail.gmail.com>
To: Umutcan ŞİMŞEK <s.umutcan@gmail.com>
Cc: public-semweb-lifesci@w3.org, michel dumontier <michel.dumontier@gmail.com>
Hi Umutcan,

Bio2RDF is now providing versions of some of the datasets in the LODD set.

In the case of DrugBank, you can find the downloadable dataset at [1],
and the script we used is at [2]. The SPARQL endpoint will be at [3],
but I have a feeling that it has not yet been updated. Michel
Dumontier could tell you the status of the SPARQL endpoint and the
downloadable dataset. There is also a version of the Clinical Trials
dataset available [4].



[1] http://download.bio2rdf.org/release/2/drugbank/
[2] https://github.com/bio2rdf/bio2rdf-scripts/tree/master/drugbank
[3] http://cu.drugbank.bio2rdf.org/sparql
[4] https://github.com/bio2rdf/bio2rdf-scripts/tree/master/clinical-trials

On 12 December 2012 01:46, Umutcan ŞİMŞEK <s.umutcan@gmail.com> wrote:
> Hi folks,
> I'm graduating this year and I'd like to use LODD for  my bachelor thesis.
> I'm such a "noob" at linked data concepts, still learning lots of thing but
> I'm pretty interested in.
> It's good to hear that project is still alive but no need to lie, first time
> I saw that Internal Errors, I thought, I was going to need to  choose a new
> topic for my thesis. Because there was no explanation about the current
> movement of datasets. Therefore it would be nice there was a brief update at
> datasets page [1] about current situation, some kind of warning or
> something, in case of someone else like me planning to use those datasets.
> Thanks
> [1] http://www.w3.org/wiki/HCLSIG/LODD/Data
> --
> Umutcan ŞİMŞEK
> Senior student
> Computer Science Department, Ege University, Izmir/Turkey
> Part-time IT Team Supervisor
> ARGEFAR Pharmaceutical Research and Pharmacokinetic Development Center
> Blog(Turkish): http://blog.umutcansimsek.com
> LinkedIn: http://www.linkedin.com/pub/umutcan-%C5%9Fim%C5%9Fek/53/199/26a
Received on Tuesday, 11 December 2012 23:19:12 UTC

This archive was generated by hypermail 2.3.1 : Wednesday, 7 January 2015 14:52:59 UTC