W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > April 2012

Re: Minutes from Monday's Linked Life Data (BioRDF / LODD) teleconference

From: Helen Parkinson <parkinson@ebi.ac.uk>
Date: Fri, 27 Apr 2012 10:46:08 +0100
Message-ID: <4F9A6AE0.1040703@ebi.ac.uk>
To: Mark <markw@illuminae.com>
CC: "M. Scott Marshall" <mscottmarshall@gmail.com>, HCLS <public-semweb-lifesci@w3.org>
Mark

good question. There could be subproperties. However, in practice as we 
are trying to detect these relationships across several databases and 
millions of samples the underlying individual data models make it 
challenging to detect derived from, so having any confidence and in sub 
properties for existing data is challenging. We are experimenting with 
provenance for derived-from.

Practically I don't think we would be able to supply data using these 
more granular relations with confidence,  so we wouldn't use them, at 
least for BioSamples,

regards

Helen



On 27/04/2012 10:05, Mark wrote:
> Would there be sub-properties of "derived-from": "extracted-from" and 
> "adapted-from"?
>
> M
>
>
>
> On Fri, 27 Apr 2012 10:54:21 +0200, Helen Parkinson 
> <parkinson@ebi.ac.uk> wrote:
>
>
>> Derived-from can be used to model e.g. DNAs derived from a cell line, 
>> a blood derived from a person etc. We will be using this in the 
>> BioSamples database and
>
>

-- 
Helen Parkinson, PhD
Team Leader
Functional Genomics Group
EBI

EBI 01223 494672
Skype: helen.parkinson.ebi
www.ebi.ac.uk/fgpt/
Received on Friday, 27 April 2012 09:46:42 GMT

This archive was generated by hypermail 2.3.1 : Tuesday, 26 March 2013 18:01:07 GMT