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Re: Minutes from Monday's Linked Life Data (BioRDF / LODD) teleconference

From: Jim McCusker <james.mccusker@yale.edu>
Date: Thu, 26 Apr 2012 15:29:12 -0400
Message-ID: <CAAtgn=TA2td=w+SZqgUTh6TgY3s_VGioXYtjqHW=bKgYhES_7A@mail.gmail.com>
To: Mark <markw@illuminae.com>
Cc: "M. Scott Marshall" <mscottmarshall@gmail.com>, HCLS <public-semweb-lifesci@w3.org>
No problem, this was something that was added after the telecon, and I
hadn't mentioned it to anyone outside of my immediate collaborators.

Jim

On Thu, Apr 26, 2012 at 3:22 PM, Mark <markw@illuminae.com> wrote:
> (apologies for not looking it up myself - I'm still stuck without internet
> access at home, and my cell provider in Spain cut me off from high-speed
> cell access too, due to over-use... So I'm basically dial-up speed on my
> phone... And this little seen isn't great for exploring ontologies!)
>
>
>
>
> Jim McCusker <james.mccusker@yale.edu> wrote:
>>
>> Actually, we've switched over to generating subproperties of
>> sio:has_predicate, so I'm glad you suggested the same thing.
>>
>> Jim
>>
>> On Thu, Apr 26, 2012 at 2:07 PM, Mark <markw@illuminae.com> wrote:
>> > Hmmmm... what's the range of that predicate? It's a bit like the SIO
>> > "has
>> > attribute", where you need to be sure to explicitly type what's at the
>> > other
>> > end to do "useful" reasoning. We're just concluding a project where we
>> > use
>> > species-of-origin to restrict the choices the SHARE query resolver can
>> > make
>> > when it queries the SADI registry. (the query requires the discovery of
>> > a
>> > BLAST service, and it will chose the right one based on the species that
>> > the
>> > sequence is derived from...)
>> >
>> > Similar problem? if so, let me know and I'll post the model we came-up
>> > with
>> > a few weeks ago... Maybe we can converge on a common solution?
>> >
>> > Cheers all!
>> >
>> > M
>> >
>> >
>> >
>> > "M. Scott Marshall" <mscottmarshall@gmail.com> wrote:
>> >>
>> >> We had an interesting discussion with Jim McCusker about Linked Data /
>> >> RDF representations of MAGE-TAB and some issues, such as choices of
>> >> predicates to make describe a human sample.
>> >>
>> >> how to encode "is a sample originating from human"
>> >> closest now is "has characteristic"
>> >>
>> >> Jim showed us some linked data versions of MAGE-TAB containing
>> >> descriptions and data of studies. Very nice!
>> >>
>> >> The minutes are here:
>> >> http://www.w3.org/2012/04/23-HCLS-minutes.html
>> >>
>> >> Cheers,
>> >> Scott
>> >>
>> >
>>
>>
>>
>> --
>> Jim McCusker
>> Programmer Analyst
>> Krauthammer Lab, Pathology Informatics
>> Yale School of Medicine
>> james.mccusker@yale.edu | (203) 785-6330
>> http://krauthammerlab.med.yale.edu
>>
>> PhD Student
>> Tetherless World Constellation
>> Rensselaer Polytechnic Institute
>> mccusj@cs.rpi.edu
>> http://tw.rpi.edu
>>
>



-- 
Jim McCusker
Programmer Analyst
Krauthammer Lab, Pathology Informatics
Yale School of Medicine
james.mccusker@yale.edu | (203) 785-6330
http://krauthammerlab.med.yale.edu

PhD Student
Tetherless World Constellation
Rensselaer Polytechnic Institute
mccusj@cs.rpi.edu
http://tw.rpi.edu
Received on Thursday, 26 April 2012 19:30:01 GMT

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