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Re: Minutes from Monday's Linked Life Data (BioRDF / LODD) teleconference

From: Jim McCusker <james.mccusker@yale.edu>
Date: Thu, 26 Apr 2012 15:04:28 -0400
Message-ID: <CAAtgn=T2bciALTkGE5NRqpwSDcf3mPKTQJNjqKbPHVCmA45R+g@mail.gmail.com>
To: Mark <markw@illuminae.com>
Cc: "M. Scott Marshall" <mscottmarshall@gmail.com>, HCLS <public-semweb-lifesci@w3.org>
Actually, we've switched over to generating subproperties of
sio:has_predicate, so I'm glad you suggested the same thing.

Jim

On Thu, Apr 26, 2012 at 2:07 PM, Mark <markw@illuminae.com> wrote:
> Hmmmm... what's the range of that predicate? It's a bit like the SIO "has
> attribute", where you need to be sure to explicitly type what's at the other
> end to do "useful" reasoning. We're just concluding a project where we use
> species-of-origin to restrict the choices the SHARE query resolver can make
> when it queries the SADI registry. (the query requires the discovery of a
> BLAST service, and it will chose the right one based on the species that the
> sequence is derived from...)
>
> Similar problem? if so, let me know and I'll post the model we came-up with
> a few weeks ago... Maybe we can converge on a common solution?
>
> Cheers all!
>
> M
>
>
>
> "M. Scott Marshall" <mscottmarshall@gmail.com> wrote:
>>
>> We had an interesting discussion with Jim McCusker about Linked Data /
>> RDF representations of MAGE-TAB and some issues, such as choices of
>> predicates to make describe a human sample.
>>
>> how to encode "is a sample originating from human"
>> closest now is "has characteristic"
>>
>> Jim showed us some linked data versions of MAGE-TAB containing
>> descriptions and data of studies. Very nice!
>>
>> The minutes are here:
>> http://www.w3.org/2012/04/23-HCLS-minutes.html
>>
>> Cheers,
>> Scott
>>
>



-- 
Jim McCusker
Programmer Analyst
Krauthammer Lab, Pathology Informatics
Yale School of Medicine
james.mccusker@yale.edu | (203) 785-6330
http://krauthammerlab.med.yale.edu

PhD Student
Tetherless World Constellation
Rensselaer Polytechnic Institute
mccusj@cs.rpi.edu
http://tw.rpi.edu
Received on Thursday, 26 April 2012 19:05:18 GMT

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