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Re: Teleconference Reminder: Clinical Decision Support for Personalized Medicine

From: Matthias Samwald <matthias.samwald@meduniwien.ac.at>
Date: Thu, 26 Apr 2012 16:57:32 +0200
Message-ID: <5E9AC47EA7D24E7BBA359A9804C1BF2C@zetsu>
To: "Jerven Bolleman" <me@jerven.eu>
Cc: <public-semweb-lifesci@w3.org>
Hi Jerven,
(CCing the mailing list)

Yes, I experimented with SPIN a lot.
The idea of simple SPARQL rules is to be a *simple* alternative to SPIN that 
is very easy to understand and to implement. SPIN is powerful, but also very 
complex, and the RDF serialization of SPARQL queries and templates can 
easily make generating SPIN rules quite awkward. Simple SPARQL Rules can be 
implemented with any triplestore or RDF application within minutes, while 
implementations of SPIN are still rather sparse (as far as I know there is 
only the Jena-based reference implementation by TopQuadrant, and a partial 
implemntation in recent versions of AllegroGraph).

Cheers,
Matthias

--------------------------------------------------
From: "Jerven Bolleman" <me@jerven.eu>
Sent: Thursday, April 26, 2012 4:44 PM
To: "Matthias Samwald" <matthias.samwald@meduniwien.ac.at>
Subject: Re: Teleconference Reminder: Clinical Decision Support for 
Personalized Medicine

> Hi Matthias,
>
> Have you  had a look at SPIN inferencing? Quite similar to your Simple
> SPARQL rules. Except seems to be much more complete.
> www.spinrdf.org
>
> Regards,
> Jerven
>
> On Thu, Apr 26, 2012 at 12:16 PM, Matthias Samwald
> <matthias.samwald@meduniwien.ac.at> wrote:
>> Dear all,
>>
>> This is a reminder of the CDS telecon today at 11am EST (17:00 Central
>> European Time). Agenda:
>>
>> Discussing Matthias' "Simple SPARQL Rules" (A very light-weight approach 
>> to
>> formulating rules for decision support and other purposes with SPARQL
>> queries). First version of the ontology: http://purl.org/zen/ssr.ttl
>> Pharmacogenomics Decision Support Table in Google Docs that automatically
>> generates Simple SPARQL Rules for decision support based on the
>> Translational Medicine Ontology(and its pharmacogenomics extensions) -
>> https://docs.google.com/spreadsheet/pub?hl=en_US&hl=en_US&key=0AiGT-vnkGcoLdFFVMEdqcFdYaDFqS0xHTnlUT0N3cEE&single=true&gid=3&output=html
>> Feedback and discussion
>> Other topics suggested by participants
>>
>> Cheers,
>> Matthias
>>
>>
>>
>>
>> ''' Conference Details'''
>>  Clinical Decision Support for Personalized Medicine
>>  http://www.w3.org/wiki/HCLSIG/CDS
>>
>>  Date of Call: Thursday April 26 2012
>>
>>  Time of Call: 11:00am - 12:00pm ET
>>  Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>  Dial-In #: +33.4.26.46.79.03 (Paris, France)
>>  Dial-In #: +44.203.318.0479 (London, UK)
>>  Participant Access Code: 4257 ("HCLS")
>>  IRC Channel: irc.w3.org port 6665 channel #HCLS (see
>> [http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see
>> [http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
>>  Mibbit quick start: Click on
>> [http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls 
>> mibbit]
>> for instant IRC access
>>  Duration: 1h
>>  Convener: Matthias Samwald
>>
>> ''' Agenda'''
>> * "Simple SPARQL Rules" - First version of the ontology:
>> http://purl.org/zen/ssr.ttl
>> * Pharmacogenomics Decision Support Table in Google Docs that 
>> automatically
>> generates Simple SPARQL Rules for decision support based on the
>> Translational Medicine Ontology(and its pharmacogenomics extensions)
>> * Feedback and discussion
>>
>> * Other topics suggested by participants
>
>
>
> -- 
> Jerven Bolleman
> me@jerven.eu
>
> 
Received on Thursday, 26 April 2012 14:59:33 GMT

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