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Re: Katy Wolstencroft @ Systems Biology Task Force - Wed 18th April at 11AM EDT - TODAY!

From: Helena Deus <helenadeus@gmail.com>
Date: Wed, 18 Apr 2012 17:57:45 +0100
Message-ID: <CAPkJ_9m-WAKi=ujgvvSwcJPTxWR-2QO-YFLk7dni3RdAdMeXPg@mail.gmail.com>
To: Joanne Luciano <jluciano@gmail.com>
Cc: "M. Scott Marshall" <mscottmarshall@gmail.com>, W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, "<Laleh.Kazemzadeh@deri.org>" <Laleh.Kazemzadeh@deri.org>
Eric also has problems with the time and he proposes pushing the telco to 1
hour later, but that would mean Jun could not make it most of the time...

I think 11 or 12 AM EDT is a good time for both EU and US participants
I've prepared a doodle poll - http://www.doodle.com/wtb7y5isbs3p25fk

Some of the slots are overlapping with other w3c telcos but if most of the
would-be sysBio participants prefer another weekday, we can try to ask
Michel's permission to rearrange the calendars :)


Best,
Lena

On Wed, Apr 18, 2012 at 5:46 PM, Joanne Luciano <jluciano@gmail.com> wrote:

> +1
>
> Or another time?
>
> I signed on, but couldn't stay had to catch a train (FYI - highly
> recommend the train to/from Rensselaer / NY city. Beautiful ride along the
> east bank of the Hudson river (2.5 hrs for planning purposes))
>
> Sorry to miss you Katy!
>
> Also, in case any of you have not seem Katy's earlier work on classifying
> phosphotases check it out.  It is a beautiful straightforward example of
> using defined classes in OWL and reasoners to do science. I have used that
> example many times.
>
> Katy- were you able to get the wet lab experiment done to look for the
> unclassified phosphate?
>
> Joanne
>
> Sent from my iPhone
>
> On Apr 18, 2012, at 10:58 AM, "M. Scott Marshall" <
> mscottmarshall@gmail.com> wrote:
>
> Regrets. Any chance of a webex recording?
>
> Cheers,
> Scott
> On Apr 18, 2012 12:42 PM, "Helena Deus" <helenadeus@gmail.com> wrote:
>
>> Dear All,
>>
>> Please join me tomorrow at the Systems Biology Task force,
>> where Katherine Wolstencroft will give us an overview of SEEK.
>>
>> *PLEASE NOTE:* Like last time, we will attempt to use webex for slide
>> sharing, so I will share the webex link on IRC at 11AM EDT today.
>>
>> *
>>
>> SEEK: An e-Laboratory for Systems Biology in Europe
>> Franco B. Du Preez(1), Stuart Owen(2), Katherine Wolstencroft(2), Olga
>> Krebs(3), Quyen Nguyen(3), Wolfgang Müller(3), Carole Goble(2) & Jacky L.
>> Snoep(4)
>>
>> The SEEK is an open-source, web-based platform for the management and
>> exchange of Systems Biology data, models and processes. It was originally
>> developed in the SysMO-DB project (http://www.sysmodb.org) for the
>> pan-European SysMO consortia (Systems Biology of Micro Organisms). However,
>> it is now also being adopted by a large number of other consortia across
>> Europe, for example, the Virtual Liver, EviMalar and Unicellsys.
>>
>> The SEEK is an e-Laboratory. In addition to providing a registry and
>> repository of Systems Biology data, it provides facilities for model
>> simulation, data exploration and is a gateway to other useful resources,
>> such as JWS Online, BioModels and the BioPortal. Taverna workflows will
>> also be available for discovering and running through SEEK, giving SEEK
>> users access to a collection of complex Systems Biology analysis methods
>> and data integration protocols (http://www.myexperiment.org/packs/47.html
>> )
>>
>> Underlying the SEEK is the JERM (Just Enough Results Model), which is a
>> minimum information model describing the relationships between SEEK assets.
>> The JERM incorporates the ISA structure (Investigation, Study, Assay) to
>> associate data with the assays that generated them, and to allow the
>> aggregation of assays into wider studies and investigations. JERM data
>> compliance is managed by the distribution of JERM spreadsheet templates,
>> which can be semantically enabled with RightField, a tool that embeds
>> collections of ontology terms into specific spreadsheet cells. Ongoing work
>> is exploring extracting, storing and querying collected data and metadata
>> in RDF.
>> 1.Manchester Interdisciplinary Biocentre, University of Manchester, UK
>> 2.School of Computer Science, University of Manchester, UK
>> 3.Heidelberg Institute for Theoretical Studies (Hits), gGmbH, Germany
>> 4.Department of Biochemistry, Stellenbosch University, South Africa
>>
>> Katy Wolstencroft
>>
>> I am a Research Fellow at the University of Manchester and a visiting
>> researcher at the Vrije Universiteit in Amsterdam. I am a member of the
>> SysMO-DB project and the myGrid consortium. My background is in
>> bioinformatics and my work focuses on data integration, semantic data
>> integration and scientific workflows.
>>
>> Stuart Owen is a Software Architect at the University of Manchester. He
>> is a member of the SysMO-DB project and the myGrid consortium. He has a
>> long background in Software Engineering, with a particular focus on
>> Knowledge Management.
>> *
>> *
>> *
>> *Conference Details
>> *Systems Biology
>> http://www.w3.org/wiki/HCLSIG/SysBio
>>
>>  Date of Call: Wednesday April 18 2012
>>  Time of Call: 11:00am - 12:00pm EDT
>>  Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>  Dial-In #: +33.4.26.46.79.03 (Paris, France)
>>  Dial-In #: +44.203.318.0479 (London, UK)
>>  Participant Access Code: 4257 ("HCLS")
>>  IRC Channel: irc.w3.org port 6665 channel #HCLS (see [
>> http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see [
>> http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
>>  Mibbit quick start: Click on [
>> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls mibbit]
>> for instant IRC access
>>  Duration: 1h
>>  Convener: Helena F Deus
>>
>> *Agenda
>> ** Katy's talk
>> * Ideas about next invited speakers
>> * Volunteers to start looking at systems biology models
>>
>>
>>
>> --
>> Helena F. Deus
>> Post-Doctoral Researcher at DERI/NUIG
>> http://lenadeus.info/
>>
>


-- 
Helena F. Deus
Post-Doctoral Researcher at DERI/NUIG
http://lenadeus.info/
Received on Wednesday, 18 April 2012 16:58:38 GMT

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