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Re: Katy Wolstencroft @ Systems Biology Task Force - Wed 18th April at 11AM EDT - TODAY!

From: Helena Deus <helenadeus@gmail.com>
Date: Wed, 18 Apr 2012 13:58:18 +0100
Message-ID: <CAPkJ_9mDDVbsC64pgJ94XY=vS4r=nr+RmLUEdjmj8bF+oDQjig@mail.gmail.com>
To: W3C HCLSIG hcls <public-semweb-lifesci@w3.org>, Laleh.Kazemzadeh@deri.org
Hi all,

Apologies - I wrote tomorrow in my email, but I meant TODAY!! Katy is
giving us an overview of SEEK today!


On Wed, Apr 18, 2012 at 11:38 AM, Helena Deus <helenadeus@gmail.com> wrote:

> Dear All,
> Please join me tomorrow at the Systems Biology Task force, where Katherine
> Wolstencroft will give us an overview of SEEK.
> *PLEASE NOTE:* Like last time, we will attempt to use webex for slide
> sharing, so I will share the webex link on IRC at 11AM EDT today.
> *
> SEEK: An e-Laboratory for Systems Biology in Europe
> Franco B. Du Preez(1), Stuart Owen(2), Katherine Wolstencroft(2), Olga
> Krebs(3), Quyen Nguyen(3), Wolfgang Müller(3), Carole Goble(2) & Jacky L.
> Snoep(4)
> The SEEK is an open-source, web-based platform for the management and
> exchange of Systems Biology data, models and processes. It was originally
> developed in the SysMO-DB project (http://www.sysmodb.org) for the
> pan-European SysMO consortia (Systems Biology of Micro Organisms). However,
> it is now also being adopted by a large number of other consortia across
> Europe, for example, the Virtual Liver, EviMalar and Unicellsys.
> The SEEK is an e-Laboratory. In addition to providing a registry and
> repository of Systems Biology data, it provides facilities for model
> simulation, data exploration and is a gateway to other useful resources,
> such as JWS Online, BioModels and the BioPortal. Taverna workflows will
> also be available for discovering and running through SEEK, giving SEEK
> users access to a collection of complex Systems Biology analysis methods
> and data integration protocols (http://www.myexperiment.org/packs/47.html)
> Underlying the SEEK is the JERM (Just Enough Results Model), which is a
> minimum information model describing the relationships between SEEK assets.
> The JERM incorporates the ISA structure (Investigation, Study, Assay) to
> associate data with the assays that generated them, and to allow the
> aggregation of assays into wider studies and investigations. JERM data
> compliance is managed by the distribution of JERM spreadsheet templates,
> which can be semantically enabled with RightField, a tool that embeds
> collections of ontology terms into specific spreadsheet cells. Ongoing work
> is exploring extracting, storing and querying collected data and metadata
> in RDF.
> 1.Manchester Interdisciplinary Biocentre, University of Manchester, UK
> 2.School of Computer Science, University of Manchester, UK
> 3.Heidelberg Institute for Theoretical Studies (Hits), gGmbH, Germany
> 4.Department of Biochemistry, Stellenbosch University, South Africa
> Katy Wolstencroft
> I am a Research Fellow at the University of Manchester and a visiting
> researcher at the Vrije Universiteit in Amsterdam. I am a member of the
> SysMO-DB project and the myGrid consortium. My background is in
> bioinformatics and my work focuses on data integration, semantic data
> integration and scientific workflows.
> Stuart Owen is a Software Architect at the University of Manchester. He is
> a member of the SysMO-DB project and the myGrid consortium. He has a long
> background in Software Engineering, with a particular focus on Knowledge
> Management.
> *
> *
> *
> *Conference Details
> *Systems Biology
> http://www.w3.org/wiki/HCLSIG/SysBio
>  Date of Call: Wednesday April 18 2012
>  Time of Call: 11:00am - 12:00pm EDT
>  Dial-In #: +1.617.761.6200 (Cambridge, MA)
>  Dial-In #: + (Paris, France)
>  Dial-In #: +44.203.318.0479 (London, UK)
>  Participant Access Code: 4257 ("HCLS")
>  IRC Channel: irc.w3.org port 6665 channel #HCLS (see [
> http://www.w3.org/Project/IRC/ W3C IRC page] for details, or see [
> http://cgi.w3.org/member-bin/irc/irc.cgi Web IRC])
>  Mibbit quick start: Click on [
> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls mibbit]
> for instant IRC access
>  Duration: 1h
>  Convener: Helena F Deus
> *Agenda
> ** Katy's talk
> * Ideas about next invited speakers
> * Volunteers to start looking at systems biology models
> --
> Helena F. Deus
> Post-Doctoral Researcher at DERI/NUIG
> http://lenadeus.info/

Helena F. Deus
Post-Doctoral Researcher at DERI/NUIG
Received on Wednesday, 18 April 2012 12:59:12 UTC

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