hi lena, also, if you find a sparql end point for other sequence databases/repositories often they will have a one-to-one reference into ensemble. cheers, michael Michael Miller Software Engineer Institute for Systems Biology *From:* public-semweb-lifesci-request@w3.org [mailto: public-semweb-lifesci-request@w3.org] *On Behalf Of *Joachim Baran *Sent:* Wednesday, October 19, 2011 7:31 AM *To:* Philippe; Helena Deus *Cc:* W3C HCLSIG hcls; philip.cotter@ucd.ie *Subject:* Re: ensembl SPARQL endpoint Hello, On 19/10/2011 10:53, Helena Deus wrote: I am working with agilent probe_ids and it seems only ensembl has the correspondence to the correct gene. Does anyone know of any plans for RDF-izing or adding a SPARQL endpoint to ensembl? A subset of SPARQL is supported in the release candidate 7 of BioMart 0.8: https://code.oicr.on.ca/svn/biomart/biomart-java/branches/release-0_8-candidate_7 Output is either provided in form of SPARQL-XML or RDF N3. The processors for formatting are selected in the query URL, which are "SPARQLXML" and "RDFN3" respectively. In the documentation, only "SPARQLXML" is given as an example, but you can replace it with "RDFN3"*. Joachim * in most cases *Joachim Baran, PhD** *Database Programmer/Technical Analyst, Informatics and Bio-computing *Ontario Institute for Cancer Research* MaRS Centre, South Tower 101 College Street, Suite 800 Toronto, Ontario, Canada M5G 0A3 Tel: 647-258-4319 Toll-free: 1-866-678-6427 www.oicr.on.ca This message and any attachments may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this message in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this message may not be that of the organization.
Received on Thursday, 20 October 2011 15:21:11 UTC