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Re: Notes last HCLS Sci Disc call and plan for the next one

From: David Shotton <david.shotton@zoo.ox.ac.uk>
Date: Wed, 05 Oct 2011 17:45:40 +0100
Message-ID: <4E8C89B4.6020408@zoo.ox.ac.uk>
To: "Waard, Anita de A (ELS-AMS)" <A.dewaard@elsevier.com>
CC: Tim Clark <tim.clark@rcn.com>, HCLS IG <public-semweb-lifesci@w3.org>, "scidiscourse@googlegroups.com" <scidiscourse@googlegroups.com>, "samwald@gmx.at" <samwald@gmx.at>, "gil@isi.edu" <gil@isi.edu>, Alberto Accomazzi <aaccomazzi@cfa.harvard.edu>, "Allen, Bradley P (ELS-SDG)" <B.Allen@elsevier.com>, Sophia Ananiadou <Sophia.Ananiadou@manchester.ac.uk>, Philip Bourne <bourne@sdsc.edu>, Gully Burns <gully@usc.edu>, "Daniel, Ronald (ELS-SDG)" <R.Daniel@elsevier.com>, Rahul Dave <rahuldave@gmail.com>, Alf Eaton <A.Eaton@nature.com>, Alexander Garcia Castro <alexgarciac@gmail.com>, Matthew Gamble <matthew.gamble@gmail.com>, Alyssa Goodman <agoodman@cfa.harvard.edu>, Paul Groth <pgroth@gmail.com>, Tudor Groza <tudor.groza@deri.org>, "Hays, Ellen (ELS-BUR)" <E.Hays@elsevier.com>, Maryann Martone <maryann@ncmir.ucsd.edu>, David R Newman <drn05r@ecs.soton.ac.uk>, "Scerri, Antony (ELS-CAM)" <A.scerri@elsevier.com>, Jack Park <jackpark@gmail.com>, Silvio Peroni <speroni@cs.unibo.it>, Steve Pettifer <steve.pettifer@manchester.ac.uk>, Philippe Rocca-Serra <proccaserra@googlemail.com>, Cartic Ramakrishnan <cartic@isi.edu>, Jodi Schneider <jodi.schneider@deri.org>, Kaitlin Thaney <k.thaney@digital-science.com>, Karin Verspoor <Karin.Verspoor@ucdenver.edu>, Lynette Hirschman <lynette@mitre.org>, "sa.sansone@gmail.com" <sa.sansone@gmail.com>, Kees van Bochove <business@keesvanbochove.nl>, Katy Wolstencroft <katy@cs.man.ac.uk>, Jun Zhao <jun.zhao@zoo.ox.ac.uk>
Dear Anita,

re the ISATAB collaboration (your point 2 below): Tim, Philippe and I 
agreed to work on this, to take forward the ISA-RDF proposal and combine 
it with the generic elements from our MIIDI minimum information 
standard, the ideas for MIBBI Core, and other attempts at defining 
minimal information requirements for biomedical investigations that Tim 
knows about.  We will attempt to come up with an agreed set of terms - 
that we could call MIBBI Core for want of a better name - that are 
defined and mapped to RDF.  I plan to start work on this tomorrow, with 
a view to circulating a draft to Tim and Philippe for amendment, then 
submission to all the task force in advance of our next conference call 
on October 10th.

Kind regards,

David


On 04/10/2011 21:55, Waard, Anita de A (ELS-AMS) wrote:
> Dear all,
>
> I think we never put up notes for last week's meeting, oops! The conclusions were, as far as I can recall:
>
> 1 - Re. our old use cases: we will revisit use case 1 (Jodi Schneider/Anita de Waard) and 2 (Tim will ask Tudor Groza's input). Use case 3 has been addressed by ORB and is dropped.
>
> 2 - Re. ISATAB collaboration: this will also be written up as a use case according to the new template (see links below)
>
> 3 - Before the next call, all use cases will be circulated in draft and comments invited
>
> 4 - Also before the next call, we will all circulate use case ideas we would like to work on.
>
> In this light, I hereby enclose the draft document Jodi and I have been working on: Use Case 1, but following the new template.
>
> I would like to solicit collaboration on two other use cases:
>
> 1) Linking patient data to clinical recommendations and then to clinical evidence
>
> 2) Mining treatment outcomes as a way to provide an anonymous 'clinical trial' type of data source that can be made freely available and used for drug efficacy/outcome studies.
>
> If anyone is interested in working on either of these, please drop me a line.
>
> The proposal is that we discuss all submitted and proposed use cases at the call next week.
> All suggestions most welcome!
>
> Best,
>
> - Anita.
>
> Anita de Waard
> Disruptive Technologies Director, Elsevier Labs
> http://elsatglabs.com/labs/anita/
> a.dewaard@elsevier.com
>
>
>
> -----Original Message-----
> From: Waard, Anita de A (ELS-AMS)
> Sent: Mon 9/26/2011 9:15
> To: Tim Clark; HCLS IG
> Subject: RE: Reminder: HCLS Sci Disc call - ISA-RDF&  Use Case Review- Mon 26 Sept 10am-11am EDT / 14:00-15:00 UTC
>
> Dear all,
>
> Further to the first agenda point, use cases, for our call in 42 minutes, I'd like to review:
>
> a) The new HCLS Use Case template which can be found here: https://docs.google.com/document/d/1DRnwXw7xIOLTjZ4TUiDtT80ouSQYfUqM9KWKXVgr60s/edit?hl=en_US
>
> b) Our current three use cases: http://www.w3.org/wiki/HCLSIG/SWANSIOC/Actions/RhetoricalStructure#Use_Cases
>
> and ask ourselves and each other:
>
> 1) Are these use cases still valid, or have they been addressed by our work so far?
> 2) If they are valid, how can we get them to be compliant with the new format: can someone take on each use cases?
> 3) If there's time: brainstorm about other use cases, or otherwise make a plan to gather more use cases before the next meeting.
>
> Talk in a bit! Best,
>
> - Anita.
>
> Anita de Waard
> Disruptive Technologies Director, Elsevier Labs
> http://elsatglabs.com/labs/anita/
> a.dewaard@elsevier.com
>
>
>
> -----Original Message-----
> From: Tim Clark [mailto:tim.clark@rcn.com]
> Sent: Fri 9/23/2011 11:04
> To: HCLS IG
> Subject: Reminder: HCLS Sci Disc call - ISA-RDF&  Use Case Review- Mon 26 Sept 10am-11am EDT / 14:00-15:00 UTC
>
> Colleagues:
>
> This is a reminder for the biweekly HCLS Scientific Discourse concall scheduled for Monday, 26 Sept 10am-11am EDT / 14:00-15:00 UTC.
>
> As discussed in the previous call, we'll be focusing on defined tasks and use cases for the coming year.
>
> - we will begin a review and update of our use cases
>
> - ISA-RDF will be discussed as a potential shared task for 2011-12 (see underlying ISA-TAB project here:  http://isa-tools.org/  for some background)
>
>
>
>
>
>
> Elsevier B.V. Registered Office: Radarweg 29, 1043 NX Amsterdam, The Netherlands, Registration No. 33156677 (The Netherlands)
>

-- 

Dr David Shotton
Image Bioinformatics Research Group, Department of Zoology, University 
of Oxford
South Parks Road, Oxford OX1 3PS, UK.   Phone: +44 (0)1865-271193   
Skype: davidshotton
Received on Wednesday, 5 October 2011 16:46:30 GMT

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