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RE: SWAN-myExp-OBI-ISA

From: Michael Miller <Michael.Miller@systemsbiology.org>
Date: Mon, 28 Nov 2011 11:05:40 -0800
Message-ID: <bd01b9de108e6e91a7fd9e6e88413865@mail.gmail.com>
To: Tim Clark <tim_clark@harvard.edu>, Tim Clark <tim.clark@rcn.com>, HCLS IG <public-semweb-lifesci@w3.org>, scidiscourse@googlegroups.com, Alberto Accomazzi <aaccomazzi@cfa.harvard.edu>, "Bradley P (ELS-SDG) Allen" <B.Allen@elsevier.com>, Sophia Ananiadou <Sophia.Ananiadou@manchester.ac.uk>, Philip Bourne <bourne@sdsc.edu>, Gully Burns <gully@usc.edu>, "Ronald (ELS-SDG) Daniel" <R.Daniel@elsevier.com>, Rahul Dave <rahuldave@gmail.com>, Alf Eaton <A.Eaton@nature.com>, Alexander Garcia Castro <alexgarciac@gmail.com>, Matthew Gamble <matthew.gamble@gmail.com>, Yolanda Gil <gil@isi.edu>, Alyssa Goodman <agoodman@cfa.harvard.edu>, Paul Groth <pgroth@gmail.com>, Tudor Groza <tudor.groza@deri.org>, ellen hays <E.Hays@elsevier.com>, Maryann Martone <maryann@ncmir.ucsd.edu>, David R Newman <drn05r@ecs.soton.ac.uk>, "Antony (ELS-CAM) Scerri" <A.scerri@elsevier.com>, Jack Park <jackpark@gmail.com>, Silvio Peroni <speroni@cs.unibo.it>, Steve Pettifer <steve.pettifer@manchester.ac.uk>, Philippe Rocca-Serra <proccaserra@googlemail.com>, Cartic Ramakrishnan <cartic@isi.edu>, Jodi Schneider <jodi.schneider@deri.org>, David Shotton <david.shotton@zoo.ox.ac.uk>, Kaitlin Thaney <k.thaney@digital-science.com>, Karin Verspoor <Karin.Verspoor@ucdenver.edu>, Lynette Hirschman <lynette@mitre.org>, Susanna-Assunta Sansone <sa.sansone@gmail.com>, Kees van Bochove <business@keesvanbochove.nl>, Katy Wolstencroft <katy@cs.man.ac.uk>, Jun Zhao <jun.zhao@zoo.ox.ac.uk>, "Taylor, Michael (ELS-OXF)" <Mi.Taylor@elsevier.com>
hi tim,

looks like you all are making good progress.

this is just from looking at the diagram, so this may already be covered,
but both protocol and factor are also related to other concepts.

protocols would be associated with 'has_output' and 'computed_from', and
there would be factor values associated with each factor of the study and
each assay would be associated with a set of factor values, one pre factor,
e.g. for dosage and time factors an assay might be associated with 1mg and
10 seconds.

also, is there any desire to track sample processing?

cheers,
michael

Michael Miller
Software Engineer
Institute for Systems Biology

> -----Original Message-----
> From: Tim Clark [mailto:tim_clark@harvard.edu]
> Sent: Monday, November 21, 2011 7:32 AM
> To: Tim Clark; HCLS IG; scidiscourse@googlegroups.com; Alberto
> Accomazzi; Bradley P (ELS-SDG) Allen; Sophia Ananiadou; Philip Bourne;
> Gully Burns; Ronald (ELS-SDG) Daniel; Rahul Dave; Alf Eaton; Alexander
> Garcia Castro; Matthew Gamble; Yolanda Gil; Alyssa Goodman; Paul Groth;
> Tudor Groza; ellen hays; Maryann Martone; David R Newman; Antony (ELS-
> CAM) Scerri; Jack Park; Silvio Peroni; Steve Pettifer; Philippe Rocca-
> Serra; Cartic Ramakrishnan; Jodi Schneider; David Shotton; Kaitlin
> Thaney; Karin Verspoor; Lynette Hirschman; Susanna-Assunta Sansone;
> Kees van Bochove; Katy Wolstencroft; Jun Zhao; Taylor, Michael (ELS-
> OXF)
> Subject: SWAN-myExp-OBI-ISA
>
>
>
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Received on Monday, 28 November 2011 19:06:22 GMT

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