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RE: GXA triples

From: Helena Deus <helenadeus@gmail.com>
Date: Thu, 9 Jun 2011 17:28:02 +0100
To: "'Michael Miller'" <mmiller@systemsbiology.org>, <public-semweb-lifesci@w3.org>
Cc: "'Jun Zhao'" <jun.zhao@zoo.ox.ac.uk>, "'Tomasz Adamusiak'" <tomasz@ebi.ac.uk>, "'James Malone'" <malone@ebi.ac.uk>
Message-ID: <005a01cc26c2$34b352a0$9e19f7e0$@gmail.com>
Hi All

That is fantastic news :-)
Was the EFO model used for this data? 

Cheers,
Lena

-----Original Message-----
From: public-semweb-lifesci-request@w3.org
[mailto:public-semweb-lifesci-request@w3.org] On Behalf Of Michael Miller
Sent: 09 June 2011 15:59
To: public-semweb-lifesci@w3.org
Cc: Jun Zhao; Tomasz Adamusiak; James Malone
Subject: GXA triples

hi all,

jun zhao has kindly hosted the initial go at triplifying the Gene Expression
Atlas (james' and tomasz' efforts)

http://www.open-biomed.org.uk/sparql/endpoint/gxa

> To access a UI for the SPARQL endpoint, please go to:
>
> 1. http://www.open-biomed.org.uk/sparql/query.html
> 2. and set path to endpoint to: endpoint/gxa

see below for more info.

cheers,
michael


Michael Miller
Software Engineer
Institute for Systems Biology

> -----Original Message-----
> From: Jun Zhao [mailto:jun.zhao@zoo.ox.ac.uk]
> Sent: Thursday, June 09, 2011 5:16 AM
> To: tomasz.adamusiak@ebi.ac.uk
> Cc: Tomasz Adamusiak; James Malone; Michael Miller
> Subject: Re: Model blank nodes for GEA data
>
> Dear all,
>
> I am pleased to let you know that the SPARQL endpoint is now up and 
> running at:
>
> http://www.open-biomed.org.uk/sparql/endpoint/gxa
>
> which has constraints such as not allowing COUNT queries.
>
<snip>
>
> Have a go and let me know what you think:)
>
> I wrote the following text in case you would like to announce it 
> publicly after running some test queries on it.
>
> ==============
>
> The total number of triples is ~37 million. They were loaded in a 
> triple store powered by Jena TDB and Milarq.
>
> The data can be accessed at the SPARQL endpoint:
>
> http://www.open-biomed.org.uk/sparql/endpoint/gxa
>
> To access a UI for the SPARQL endpoint, please go to:
>
> 1. http://www.open-biomed.org.uk/sparql/query.html
> 2. and set path to endpoint to: endpoint/gxa
>
> You can run the ASK query to test the endpoint.
>
> However, to ensure the quality of the SPARQL endpoint, it does not 
> support by default queries with COUNT etc. If you do need to test such 
> queries, please email us and we will send you the more open access 
> SPARQL endpoint.
>
> =============
>
> cheers,
>
> Jun
>
<snip>
Received on Thursday, 9 June 2011 16:28:42 UTC

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