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Re: Reminder: BioRDF telcon NOW at 11AM EDT (4PM UK, 5PM CET)

From: anita bandrowski <bandrow@gmail.com>
Date: Mon, 7 Feb 2011 09:55:41 -0800
Message-ID: <AANLkTinVGYbfEFvTWQfVYpgt2wp1NFmKZesOcPqRwQBD@mail.gmail.com>
To: "M. Scott Marshall" <mscottmarshall@gmail.com>
Cc: HCLS <public-semweb-lifesci@w3.org>, Maryann Martone <maryann@ncmir.ucsd.edu>
Thanks for inviting us to talk to you today, Scott et al.
I think that several synergies emerged.  So below are a couple of "to do's"
that will hopefully help us proceed:

Please take a look at the NIF and give us a list of datasets that you would
like to have in RDF and we will work to get this to you (not all data is
sitting inside of the same database and we do have data in MySQL, Postgres,
Oracle and others so the index is unified but not all the data are).

Here are some hopefully helpful links:
main developers page (SPARQL endpoint, ontology services, and federated data
indexes linked to from here): http://neuinfo.org/developers/
list of data sources: http://neuinfo.org/nif_components/data_federation.shtm
list of our current BRO/Biositemaps compliant resources can be found here:
http://neuinfo.org/nif/nifgwt.html?tab=registry

Can you send a link to the tool that you told us about that will transform
MySQL into RDF?  We would like to evaluate it with our group.

Please put us on the list of people who could potentially contribute to the
RDF specification of microarray data (and perhaps others?).

Please let me know if I forgot anything.
Best,
anita



On Mon, Feb 7, 2011 at 8:03 AM, M. Scott Marshall
<mscottmarshall@gmail.com>wrote:

> On Fri, Feb 4, 2011 at 7:51 PM, M. Scott Marshall
> <mscottmarshall@gmail.com> wrote:
> > A reminder of the BioRDF telcon on Monday:
> >
> > Maryann Martone and Anita Bandrowski from NIF (Neuroscience
> > Information Framework) will join us to give us a small tour of NIF
> > with a focus on how microarray resources are currently handled in NIF.
> >  Maryann and Anita can give us a (NIF) user perspective on
> > microarrays.
> >
> > Please call in to Zakim for the audio and use
> > http://connect.neuinfo.org/webinar for the screen sharing.
> >
> >
> http://esw.w3.org/HCLSIG_BioRDF_Subgroup/Meetings/2011/02-07_Conference_Call
> >
> > Cheers,
> > Scott
> >
> > == Conference Details ==
> > * Date of Call: Monday, January 31, 2011
> > * Time of Call: 11:00 am Eastern Time, 4 pm UK, 5 pm CET
> > * Dial-In #: +1.617.761.6200 (Cambridge, MA)
> > [Note: limited access to European dial in numbers below]
> > * Dial-In #: +33.4.26.46.79.03 (Nice, France)
> > * Dial-In #: +44.203.318.0479 (Bristol, UK)
> > * Participant Access Code: 4257 ("HCLS")
> > * IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page
> > for details, or see Web IRC), Quick Start: Use
> > http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls for
> > IRC access.
> > * Duration: ~1 hour
> > * Convener: M. Scott Marshall
> > * Scribe: TBD
> >
> > == Participants ==
> >
> > ==Agenda==
> > * Introductions
> > * Microarrays and NIF ([http://connect.neuinfo.org/webinar screen
> > share access]) - Maryann Martone and Anita Bandrowski
> > * Microarray RDF - Getting started on the W3C note
> > * AOB
> >
> > --
> > M. Scott Marshall, W3C HCLS IG co-chair, http://www.w3.org/blog/hcls
> > http://staff.science.uva.nl/~marshall
> >
>
>
>
> --
> M. Scott Marshall, W3C HCLS IG co-chair, http://www.w3.org/blog/hcls
> http://staff.science.uva.nl/~marshall
>



-- 
Anita Bandrowski, Ph.D.
NIF Project Curator
UCSD 858-822-3629
http://neuinfo.org
9500 Gillman Dr.#0446
la Jolla, CA 92093-0446
Received on Tuesday, 8 February 2011 10:13:36 GMT

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