W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > December 2011

Re: microarray vs. NGS

From: Jim McCusker <james.mccusker@yale.edu>
Date: Tue, 20 Dec 2011 11:38:09 -0500
Message-ID: <CAAtgn=TfVT4t4HnAnatLuwdC1PEuJwsO1PCvXX2Yy2RJ0KMnUQ@mail.gmail.com>
To: expressionrdf@googlegroups.com
Cc: HCLS <public-semweb-lifesci@w3.org>
Valid in theory. Transcript abundance is still not easily measured using
NGS, but describing the data this way is perfectly valid, anyway. :-)

Jim

On Tue, Dec 20, 2011 at 10:54 AM, Michael Miller <
Michael.Miller@systemsbiology.org> wrote:

> hi scott,
>
>
>
> in regards to our conversation about the difference between microarrays
> and NGS in the teleconference yesterday, if you look at Figure 1 in the
> paper, in step 2), if you substitute NGS for Microarray, it is still valid.
>
>
>
> cheers,
>
> michael
>
>
>
>
>
> > -----Original Message-----
>
> > From: expressionrdf@googlegroups.com
>
> > [mailto:expressionrdf@googlegroups.com] On Behalf Of M. Scott Marshall
>
> > Sent: Monday, December 19, 2011 4:03 AM
>
> > To: HCLS; expressionrdf@googlegroups.com
>
> > Subject: Reminder: BioRDF telcon *today* Monday at 11AM EDT (4PM UK,
>
> > 5PM CET)
>
> >
>
> > A reminder for the BioRDF teleconference today:
>
> > http://www.w3.org/wiki/HCLSIG_BioRDF_Subgroup/Meetings/2011/12-
>
> > 19_Conference_Call
>
> >
>
> > Cheers,
>
> > Scott
>
> >
>
> > Conference Details
>
> >
>
> > Date of Call: Monday, December 19, 2011
>
> > Time of Call: 11:00 am Eastern Time, 4 pm UK, 5 pm CET
>
> > Dial-In #: +1.617.761.6200 (Cambridge, MA)
>
> >
>
> > [Note: limited access to European dial in numbers below]
>
> >
>
> > Dial-In #: +33.4.26.46.79.03 (Nice, France)
>
> > Dial-In #: +44.203.318.0479 (Bristol, UK)
>
> > Participant Access Code: 4257 ("HCLS")
>
> > IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for
>
> > details, or see Web IRC), Quick Start: Use
>
> > http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls for
>
> > IRC access.
>
> > Duration: ~1 hour
>
> > Convener: Scott Marshall
>
> > Scribe: TBD
>
> >
>
> > Agenda
>
> >
>
> > JBI article, what to integrate into W3C note - All
>
> > Microarray, Expression RDF: Proceeding with the W3C note - All
>
> > AOB
>



-- 
Jim McCusker
Programmer Analyst
Krauthammer Lab, Pathology Informatics
Yale School of Medicine
james.mccusker@yale.edu | (203) 785-6330
http://krauthammerlab.med.yale.edu

PhD Student
Tetherless World Constellation
Rensselaer Polytechnic Institute
mccusj@cs.rpi.edu
http://tw.rpi.edu


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Received on Tuesday, 20 December 2011 16:39:16 GMT

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