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Re: BioRDF Telcon

From: mdmiller <mdmiller53@comcast.net>
Date: Sun, 3 Jan 2010 08:55:10 -0800
Message-ID: <1004F09E5E944BFFAB51E9CACA5FB2D2@mmPC>
To: "Kei Cheung" <kei.cheung@yale.edu>
Cc: "HCLS" <public-semweb-lifesci@w3.org>
hi kei,

yes, i was throwing my vote in.

> ... we also thought that entrez gene is a good start as it has cross-links 
> to many other sources including gene expression data sources.

one minor nit, the entrez gene database which describes the sequence and 
assigns an accession to it does not have crosslinks to gene expression data 
sources, i believe it is closer to say that gene expression data sources 
cross link to each other (and other data sources like pathways) by 
annotating with entrez gene accessions either directly or through an 
additional mapping layer.

cheers and happy new year,
michael

----- Original Message ----- 
From: "Kei Cheung" <kei.cheung@yale.edu>
To: "mdmiller" <mdmiller53@comcast.net>
Cc: "HCLS" <public-semweb-lifesci@w3.org>
Sent: Saturday, January 02, 2010 7:43 PM
Subject: Re: BioRDF Telcon


> Hi Michael et al,
>
> As discussed during the last BioRDF, we also thought that entrez gene is a 
> good start as it has cross-links to many other sources including gene 
> expression data sources.
>
> Cheers,
>
> -Kei
>
> mdmiller wrote:
>
>> hi all,
>>
>> looks like you're making progress on the gene expression use case, just 
>> one quick comment is that in my experience entrez gene 
>> identifiers/accessions are the best to use.  what i've seen is that they 
>> provide very good linkage to all the other sequence databases.
>>
>> cheers,
>> michael
>>
>> ----- Original Message ----- From: "Kei Cheung" <kei.cheung@yale.edu>
>> To: "HCLS" <public-semweb-lifesci@w3.org>
>> Sent: Monday, December 21, 2009 12:35 PM
>> Subject: Re: BioRDF Telcon
>>
>>
>>> The minutes for today's BioRDF call are available at the following:
>>>
>>> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/Meetings/2009/12-21_Conference_Call
>>>
>>> As we discussed during the call, I updated both the microarray use case 
>>> wiki page [1] and the provenance wiki page [2] with several example 
>>> queries to move forward.
>>>
>>> Thanks to Scott for scribing.
>>>
>>> Wish you all Happy Holidays!
>>>
>>> Cheers,
>>>
>>> -Kei
>>>
>>> [1] http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/QueryFederation2
>>> [2] 
>>> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup/MicroarrayExperimentContext
>>>
>>> Kei Cheung wrote:
>>>
>>>> This is a reminder that the next BioRDF telcon call will be held at 11 
>>>> am EDT (5 pm CET) on Monday, December 21 (see details below).
>>>>
>>>> Cheers,
>>>>
>>>> -Kei
>>>>
>>>> == Conference Details ==
>>>> * Date of Call: Monday December 21, 2009
>>>> * Time of Call: 11:00 am Eastern Time
>>>> * Dial-In #: +1.617.761.6200 (Cambridge, MA)
>>>> * Dial-In #: +33.4.89.06.34.99 (Nice, France)
>>>> * Dial-In #: +44.117.370.6152 (Bristol, UK)
>>>> * Participant Access Code: 4257 ("HCLS")
>>>> * IRC Channel: irc.w3.org port 6665 channel #HCLS (see W3C IRC page for 
>>>> details, or see Web IRC), Quick Start: Use 
>>>> http://www.mibbit.com/chat/?server=irc.w3.org:6665&channel=%23hcls for 
>>>> IRC access.
>>>> * Duration: ~1 hour
>>>> * Frequency: bi-weekly
>>>> * Convener: Kei Cheung
>>>> * Scribe: to-be-determined
>>>>
>>>> ==Agenda==
>>>> * Introduction: Kei
>>>> * HCLS KB update (Matthias, Adrian)
>>>> * Microarray use case (All)
>>>> * Possible application(s)/demo(s) (All)
>>>>
>>>>
>>>
>>>
>>>
>>>
>>
>>
>>
>
> 
Received on Sunday, 3 January 2010 16:55:35 UTC

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