- From: Kei Cheung <kei.cheung@yale.edu>
- Date: Wed, 11 Aug 2010 21:38:40 -0400
- To: Christoph Grabmueller <grabmuel@ebi.ac.uk>
- CC: "M. Scott Marshall" <mscottmarshall@gmail.com>, Satya Sahoo <satyasahoo@gmail.com>, Matthias Samwald <samwald@gmx.at>, crockey@io-informatics.com, Jun Zhao <jun.zhao@zoo.ox.ac.uk>, Helena Deus <helenadeus@gmail.com>, Rebholz <rebholz@ebi.ac.uk>, Michael Miller <mmiller@teranode.com>, HCLS <public-semweb-lifesci@w3.org>
One thing for all of us to think about is how to increase expressivity without introducing too much complexity. Just my two cents. Cheers, -Kei Christoph Grabmueller wrote: > Scott, I don't mind at all if you CC this to the HCLS mailing list. I > am aware though that a full representation of ArrayExpress/Atlas would > require a significant increase in graph complexity. > > Cheers, > Christoph > > M. Scott Marshall wrote: > >> Note to BioRDF members: Christoph Grabmeuller provided us with example >> microarray RDF from Rebholz's text mining group at EBI using EFO (see >> below). Notice that Christoph would like feedback and guidance. It >> could be informative to compare our approaches. >> >> Christoph, >> >> [Would you mind if I CC the HCLS mailing list "HCLS" >> <public-semweb-lifesci@w3.org> ? There are many others in HCLS that >> would like to know about this work and could contribute >> advice/opinions.] >> >> Thanks for your example RDF. It looks like a good start. The >> teleconference that Jun and Lena and I had with James was very useful, >> but several in the BioRDF task force couldn't attend (I organized it >> during my vacation but several others including Kei were travelling). >> I'm looking forward to helping each other find a satisfying approach >> to microarray data in RDF and hopefully arriving at a consensus that >> results in similar RDF being served directly from ArrayExpress and >> GEO. It would then be possible to perform some basic bioinformatics >> work in SPARQL without having to create special ontologies and >> namespaces. >> >> Maybe this link will help you to understand what we are doing: >> http://esw.w3.org/HCLSIG_BioRDF_Subgroup/QueryFederation2 >> Any questions you may have will help us to improve our wiki page. Some >> of our latest work is being 'staged' in DropBox at the moment but >> should be available from the wiki soon.. >> >> Cheers, >> Scott >> >> > >
Received on Thursday, 12 August 2010 01:39:25 UTC