W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > April 2010

Fwd: Some notes from the Clinical Observation Interoperability (COI) telcon

From: M. Scott Marshall <marshall@science.uva.nl>
Date: Wed, 21 Apr 2010 11:30:03 -0700
Message-ID: <j2i40e7e3111004211130m45eaaae0j757f1cca13522ad8@mail.gmail.com>
To: HCLS <public-semweb-lifesci@w3.org>
FYI - Here are some notes from yesterday's Clinical Observation
Interoperability (COI) telcon.

-Scott


---------- Forwarded message ----------
From: M. Scott Marshall <marshall@science.uva.nl>
Date: Tue, Apr 20, 2010 at 4:52 PM
Subject: Some notes from the COI telcon
To: joshua phillips <joshua.phillips@semanticbits.com>, Eric
Prud'hommeaux <eric@w3.org>, "Kashyap, Vipul B8MM"
<Vipul.Kashyap@cigna.com>, Helen Chen <chenh@uwaterloo.ca>


Here are some notes from our COI teleconf this morning (see esp. the
last few action items).

As I understand it, we need to use
http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/hl7.rq?revision=845
to create a BRIDG.rq mapping (replacing the HL7 ref):

?patient <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#administrativeGenderCodePrintName>
?sex .
-> ?patient <http://www.BRIDG.org/vocabulary#administrativeGenderCodePrintName>
?sex .

Eric - You had to go to RDB2RDF. Do we need to create some BRIDG RDF
that will be matched with above? What are the next steps?

-Scott

<Joshua> https://wiki.nci.nih.gov/display/caEHR/caEHR+Project+Wiki+Home+Page
<Joshua> This what I plan for POC:
<Joshua> https://wiki.nci.nih.gov/display/VCDE/Protocol+Eligibility+Criteria+Proof-of-Concept
<Joshua> This is what I presented about eligibility criteria:
<Joshua> https://wiki.nci.nih.gov/display/VCDE/caBIG+Semantic+Web+Opportunities#caBIGSemanticWebOpportunities-ProtocolEligibilityCriteria
* Zakim has joined #hcls
<ericP> Zakim, this is hcls
<Zakim> ok, ericP; that matches SW_HCLS(COI)11:00AM
<ericP> Zakim, please dial ericP-office
<Zakim> ok, ericP; the call is being made
<Zakim> +EricP
<mscottm> hi Eric
<ericP> heya
* vipul has joined #hcls
<mscottm> welcome!
<vipul> hi
<mscottm> https://wiki.nci.nih.gov/display/caEHR/caEHR+Project+Wiki+Home+Page
<mscottm> https://wiki.nci.nih.gov/display/VCDE/Protocol+Eligibility+Criteria+Proof-of-Concept
<mscottm> https://wiki.nci.nih.gov/display/VCDE/caBIG+Semantic+Web+Opportunities#caBIGSemanticWebOpportunities-ProtocolEligibilityCriteria
<Joshua> Joshua PSC uses BRIDG
11:05  Joshua https://cabig.nci.nih.gov/tools/PatientStudyCalendar
11:05  Joshua caEHR uses BRIDG 11:05     *** mscottm joined #hcls
11:05  Joshua
https://wiki.nci.nih.gov/display/caEHR/caEHR+Project+Wiki+Home+Page
11:07  Joshua This what I plan for POC:
11:07  Joshua
https://wiki.nci.nih.gov/display/VCDE/Protocol+Eligibility+Criteria+Proof-of-C
<vipul> Is there a URL or paper for ERGO?
<Joshua> ERGO: http://rctbank.ucsf.edu/home/ergo.html
<vipul> Thanks
<Helen> Joshua, here is the example
http://code.google.com/p/coi/source/browse/branches/1.0/kb/hl7-sdtm.rq
<Joshua> OCRe: http://rctbank.ucsf.edu/home/ocre.html
<Joshua> Another good ERGO paper:
http://www.stanford.edu/~rubin/pubs/BMIR-2009-1363.pdf
<Helen> from hl7-db
http://code.google.com/p/coi/source/browse/branches/1.0/kb/db-hl7.rq
<ericP> http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/sdtm.rq?revision=845
<ericP> http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/hl7.rq?revision=845
<Joshua> BRIDG is a constrained HL7 RIM model.
<mscottm> Joshua: translating eligibility criteria into rules
<mscottm> ..also: picking two models and defining the transformations
between them
<ericP> http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/hl7-sdtm.rq?revision=845
<mscottm> Tomorrow at 1PM ET: REMINDER: NCBO Webinar Series, April 21
- Bron Kisler, CDISC SHARE  Pathway into the Future for Standards
Development and Delivery
<Zakim> - +1.860.226.aabb
<ericP> http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/db-hl7.rq?revision=845
<ericP> http://swobjects.svn.sourceforge.net/viewvc/swobjects/trunk/tests/healthCare/simple/hl7.rq?revision=845
<mscottm> ?patient
<http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#administrativeGenderCodePrintName>
?sex .
<mscottm> -> ?patient
<http://www.BRIDG.org/vocabulary#administrativeGenderCodePrintName>
?sex .
<Zakim> SW_HCLS(COI)11:00AM has ended
<mscottm> Joshua: Will try to install SWObjects on CentOS and work out
a BRIDG example with it.
<mscottm> Scott: Will help chase Eric about any installation/compilation issues
<mscottm> Helen: Does anyone know the status of the JNI wrapper that
Eric is working on?
<mscottm> Joshua: Can I run SWObjects on a Mac?
<mscottm> Helen: Will look at generating rules with Euler

--
M. Scott Marshall
Leiden University Medical Center / University of Amsterdam
http://staff.science.uva.nl/~marshall
Received on Wednesday, 21 April 2010 18:30:39 GMT

This archive was generated by hypermail 2.3.1 : Tuesday, 26 March 2013 18:00:58 GMT