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Re: [lodd][biordf] New release of the TCM dataset

From: Kingsley Idehen <kidehen@openlinksw.com>
Date: Tue, 05 May 2009 13:11:39 -0400
Message-ID: <4A00734B.6010103@openlinksw.com>
To: Jun Zhao <jun.zhao@zoo.ox.ac.uk>
CC: public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>
Jun Zhao wrote:
> Kingsley Idehen wrote:
>> Jun Zhao wrote:
>>> Dear all,
>>>
>>> I have created a new release of the TCM dataset. The RDF dump can be 
>>> downloaded at [1].
>>>
>>> In this release, I have:
>>>
>>> * Updated URIs in the dataset with a new domain name: 
>>> http://purl.org/net/tcm/tcm.lifescience.ntu.edu.tw
>>>
>>> * Updated the dataset with the statistic confidence value of the 
>>> association between entities
>>>
>>> * Released the mapping of TCM gene names and their linking to Entrez 
>>> gene ids
>>> * Described the interlinking and provenance of the interlinking 
>>> using the oddlinker vocabulary [2], part of the LinkedMDB project 
>>> [3]. Help from Oktie Hassanzadeh (LinkedMDB) is greatly appreciated.
>>>
>>> Information about the source dataset can be found in the 
>>> accompanying release note. If you are planning to host the dataset, 
>>> I would really appreciate it if you would acknowledge the source 
>>> data provider: http://tcm.lifescience.ntu.edu.tw/; and also, drop me 
>>> a note.:)
>>>
>>> [1] 
>>> http://esw.w3.org/topic/HCLSIG_BioRDF_Subgroup?action=AttachFile&do=get&target=TCMGeneDIT_RDF_Dataset_r2.tar.gz. 
>>>
>>> [2] http://data.linkedmdb.org/resource/oddlinker/
>>> [3] http://www.linkedmdb.org/
>>>
>>> cheers,
>>>
>>> Jun
>>>
>>>
>> Jun,
>
> Hi Kingsley,
>>
>> Download attempts are failing.
>
> Really?
Try: wget from your OS.

It works via browser interaction though :-)
>
> Strange. I tried a few times myself, and it all worked for me:( Please 
> let me know if you still have problems. I will move the dump to 
> somewhere else. Sorry about this:(
>>
>> Also note, re. <http://lod.openlinksw.com> all data source providers 
>> are attributed in a natural linked data way :-)
Downloaded and added to: http://lod.openlinksw.com instance of Virtuoso.
>
> Because I am not the source data provider, so I was just being a bit 
> more careful:)

Attribution is important, actually very important :-)
>>
>> Please add the download URI to: 
>> http://esw.w3.org/topic/DataSetRDFDumps .
>>
> I updated the page. Nice to know our fly* datasets are documented 
> there too. New release of them will come out soon too.
Okay, update the page as the old data was loaded into: 
http://lod.openlinksw.com :-)

Kingsley
>
>
> Jun
>>
>>
>
>


-- 


Regards,

Kingsley Idehen	      Weblog: http://www.openlinksw.com/blog/~kidehen
President & CEO 
OpenLink Software     Web: http://www.openlinksw.com
Received on Tuesday, 5 May 2009 17:12:20 GMT

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