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Re: Is there an NCBI taxonomy in OWL ?

From: Chris Mungall <cjm@berkeleybop.org>
Date: Thu, 26 Feb 2009 18:37:49 -0800
Cc: public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, Maryann Martone <maryann@ncmir.ucsd.edu>
Message-Id: <AACC8B44-DCF1-46EE-851A-82A5E6581C41@berkeleybop.org>
To: "andrea splendiani (RRes-Roth)" <andrea.splendiani@bbsrc.ac.uk>
also..

part of the NCBI taxonomy is in NIF Organism:

http://ontology.neuinfo.org/NIF/BiomaterialEntities/NIF-Organism.owl

See also:

  https://wiki.neuinfo.org/xwiki/bin/view/Main/NIFSTDoverview
  http://neuinfo.org


On Feb 25, 2009, at 4:17 PM, andrea splendiani (RRes-Roth) wrote:

> Thanks!
>
> It'2 240M, but compressed is only 9.
> I wonder whether there is some architecture to transparently transfer
> compressed ontologies...
>
> Ciao,
> Andrea
>
> -----Original Message-----
> From: Chris Mungall [mailto:cjm@berkeleybop.org]
> Sent: 25 February 2009 20:53
> To: andrea splendiani (RRes-Roth)
> Cc: public-semweb-lifesci hcls
> Subject: Re: Is there an NCBI taxonomy in OWL ?
>
>
> On Feb 25, 2009, at 11:58 AM, Andrea Splendiani wrote:
>
>> Hi,
>>
>> I was looking for an NCBI Taxnomoy in OWL, but I didn't find it (or
>> better, could find fragment from other projects...)
>>
>> What is strange though, is that on the obo foundry website
>> (berkeleybop.org/ontologies) there are notes on the ncbi taxonomy
>> representation in owl... but not the representation itself.
>
> Temporarily dropped from the summary page but still available at the
> usual URL
> http://purl.org/obo/owl/NCBITaxon
>
> (warning: large..)
>
>> Does anybody have some hint about where I can fin an OWL version ?
>> Or even an RDF version ? Even better would a sparql endpoint
>> containing it...
>>
>> best,
>> Andrea Splendiani
>>
>>
>>
>
>
Received on Friday, 27 February 2009 02:38:37 GMT

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