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Re: [COI] Re: COI protocol #8 demo progress

From: Eric Prud'hommeaux <eric@w3.org>
Date: Wed, 25 Feb 2009 10:46:30 -0500
To: Holger Stenzhorn <holger.stenzhorn@deri.org>
Cc: helen.chen@agfa.com, public-semweb-lifesci@w3.org
Message-ID: <20090225154630.GG2154@w3.org>
On Wed, Feb 25, 2009 at 10:42:04AM -0500, Eric Prud'hommeaux wrote:
> * Holger Stenzhorn <holger.stenzhorn@deri.org> [2009-02-25 00:50-0300]
> > Helen,
> >
> > Have you tried installing the "Microsoft Visual C++ 2008 Redistributable  
> > Package (x86)" on your computer, as I mentioned to you in an earlier  
> > mail? (Thus we are not using the exact same environment... :-)) Well,  
> > that should make the SWtransformer.exe that I compiled with Visual  
> > Studio 2008 run on your machine as well.
> >
> > Also it is not quite the case that I have the same compilation problems  
> > for Cygwin as I do. It is only true that I also cannot compile the  
> > latest SVN version - versions before worked (if I remember right). When  
> > you add the boost-include (included in Cygwin and as shown in the log  
> > [1] I sent you earlier) then the whole missing boost errors disappear.  
> > But still, with the latest SVN checkout I get the error in [1]
> >
> > Cheers,
> > Holger
> >
> > [1]
> > bash-3.2$ PWD=. INCLUDES="-Iwin  
> > -I/cygdrive/c/cygwin/usr/include/boost-1_33_1" make test
> > g++ -DYYTEXT_POINTER=1  -g -O0 -W -Wall -Wextra -Wnon-virtual-dtor -ansi  
> > -std=c++98 -Iwin -I/cygdrive/c/cygwin/usr/include/boost-1_33_1 -I.  
> > -I/usr/include/libxml2 -I./SPARQLfedParser -I./TurtleSParser
> > -pipe    -c -o RdfDB.o RdfDB.cpp
> > In file included from RdfDB.hpp:9,
> >                from RdfDB.cpp:5:
> > ResultSet.hpp:362: error: base `w3c_sw::ResultSet' with only non-default  
> > constructor in class without a constructor
> 
> I think that's from a version back, so I'm guessing a bit at the error.
> I pulled a couple silly classes out. try v430 (HEAD, as of now)

Oh, one more point, I'm committing to the const-happy branch (which I
will roll back into trunk once we are done).
  svn co https://swobjects.svn.sourceforge.net/svnroot/swobjects/branches/const-happy

Holger or Helen, are you in BOS?

> > make: *** [RdfDB.o] Error 1
> >
> >
> > helen.chen@agfa.com schrieb:
> >>
> >> Eric
> >>
> >> Thanks for continuing working on SWtranformer program.  It is indeed  
> >> an important piece of work.
> >>
> >> We have been trying to compile the program without much success.
> >>
> >> My colleague Jos De Roo is using Linux and your r398 compiles and  
> >> works on his machine, but not the latest version.
> >> Holger and I use cygwin, and we can not compile it at all, see some of  
> >> the compile log in the attached file.
> >> Holger also made a window exe file but I can not run on my computer,  
> >> although we are using the same Window XP system, may due to missing  
> >> some vc++ library.
> >>
> >> Will you please take a quick look at the log and see if you can give  
> >> us some advises?
> >>
> >> Thanks for your help.
> >>
> >>
> >> Helen
> >>
> >>
> >>
> >>
> >>
> >>
> >>
> >> *Eric Prud'hommeaux <eric@w3.org>*
> >> Sent by: public-semweb-lifesci-request@w3.org
> >>
> >> 02/21/2009 10:27 AM
> >>
> >> 	
> >> To
> >> 	public-semweb-lifesci@w3.org
> >> cc
> >> 	
> >> Subject
> >> 	[COI] Re: COI protocol #8 demo progress
> >>
> >>
> >>
> >> 	
> >>
> >>
> >>
> >>
> >>
> >>
> >> * Eric Prud'hommeaux <eric@w3.org> [2008-10-11 12:11-0400]
> >> > I've created an sdtm query                 — sdtm.rq
> >> > to query data mapped from hl7                 — hl7-sdtm.rq
> >> > which is mapped from the db                 — db-hl7.rq
> >> >
> >> > I poked around to look for things like the relationship between a
> >> > patient and a medication, but am not super confident that I've aligned
> >> > with existing structures (say, in XML).
> >> >
> >> > You can try this at home by downloading an executable for your
> >> > operating system from http://www.w3.org/2008/04/SPARQLfed/ and running
> >> >   cat sdtm.rq | \
> >> >   SWtransformer -q - hl7-sdtm.rq | \
> >> >   SWtransformer -q - db-hl7.rq -s http://hospital.example/DB/ | \
> >> >   mysql -u root DiabeticPatientsDataSet --table
> >> > where the db comes from  
> >> http://www.w3.org/2008/04/DiabeticPatientsDataSet/
> >>
> >> The latest from the const-happy branch (390) pushes filters down to SQL
> >> sdtm:  FILTER (?code = 6809 || ?code = 6810)
> >> becomes rim:  FILTER ( ?code = 6809  || ?code = 6810 )
> >> becomes sql:  WHERE (indicCode_gen0.ingredient = 6809 OR  
> >> indicCode_gen0.ingredient = 6810)
> >>
> >> This should build with [[
> >>  svn co  
> >> https://swobjects.svn.sourceforge.net/svnroot/swobjects/branches/const-happy 
> >> const-happy
> >>  cd const-happy
> >>  make bin/SWtransformer
> >> ]]
> >>
> >> and then you can test it à la:
> >> [[
> >> eric@mouni:/tmp/const-happy$ bin/SWtransformer -q  
> >> tests/healthCare/in-list/sdtm.rq tests/healthCare/in-list/hl7-sdtm.rq  
> >> | bin/SWtransformer -q - tests/healthCare/in-list/db-hl7.rq -s  
> >> http://hospital.example/DB/ | mysql -u root DiabeticPatientsDataSet
> >> patient                 dob                 sex                 takes   
> >>               indicDate
> >> 1517441                 1964-09-01 00:00:00                 Female      
> >>             Glucophage TABS                 2007-07-23 00:00:00
> >> 1517441                 1964-09-01 00:00:00                 Female      
> >>             Glucophage TABS                 2007-07-23 00:00:00
> >> 1517000                 1958-01-01 00:00:00                 Male        
> >>           Metformin HCl 500 MG Tablet                 2007-06-29 
> >> 00:00:00
> >> 1517000                 1958-01-01 00:00:00                 Male        
> >>           Metformin HCl 500 MG Tablet                 2007-06-29 
> >> 00:00:00
> >> 1517403                 1981-05-11 00:00:00                 Male        
> >>           Metformin HCl 500 MG Tablet                 2008-01-03 
> >> 00:00:00
> >> 1505583                 1950-02-25 00:00:00                 Female      
> >>             Metformin HCl 500 MG Tablet                 2008-01-14  
> >> 00:00:00
> >> 1234561                 1983-01-02 00:00:00                 Male        
> >>           GlipiZIDE-Metformin HCl 2.5-250 MG Tablet                  
> >> 2007-09-28 00:00:00
> >> 1234561                 1983-01-02 00:00:00                 Male        
> >>           GlipiZIDE-Metformin HCl 2.5-250 MG Tablet                  
> >> 2007-09-28 00:00:00
> >> 1234562                 1963-12-27 00:00:00                 Female      
> >>             GlipiZIDE-Metformin HCl 2.5-250 MG Tablet                  
> >> 2007-09-28 00:00:00
> >> 1234562                 1963-12-27 00:00:00                 Female      
> >>             GlipiZIDE-Metformin HCl 2.5-250 MG Tablet                  
> >> 2008-07-28 00:00:00
> >> 1234563                 1983-02-25 00:00:00                 Male        
> >>           GlipiZIDE-Metformin HCl 2.5-250 MG Tablet                  
> >> 2007-07-28 00:00:00
> >> 1517441                 1964-09-01 00:00:00                 Female      
> >>             Glucophage TABS                 2007-07-23 00:00:00
> >> 1517441                 1964-09-01 00:00:00                 Female      
> >>             Glucophage TABS                 2007-07-23 00:00:00
> >> 1516986                 1995-06-13 00:00:00                 Male        
> >>           Metformin HCl 1000 MG Tablet                 2007-12-04 
> >> 00:00:00
> >> ]] — (sample run, using healthCare/in-list tests)
> >>
> >>
> >> > * Eric Prud'hommeaux <eric@w3.org> [2008-10-01 05:45-0400]
> >> > > I've extended these queries to include (contra)indications by  
> >> ingredient:
> >> > > [[
> >> > > PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
> >> > > PREFIX Person: <http://hospital.example/DB/Person#>
> >> > > PREFIX Sex_DE: <http://hospital.example/DB/Sex_DE#>
> >> > > PREFIX Item_Medication: <http://hospital.example/DB/Item_Medication#>
> >> > > PREFIX Medication: <http://hospital.example/DB/Medication#>
> >> > > PREFIX Medication_DE: <http://hospital.example/DB/Medication_DE#>
> >> > > PREFIX NDCcodes: <http://hospital.example/DB/NDCcodes#>
> >> > >
> >> > > SELECT ?person ?dob ?sex ?takes ?contraItem WHERE {
> >> > >   ?person     Person:MiddleName  ?middleName ;
> >> > >               Person:DateOfBirth ?dob ;
> >> > >               Person:SexDE       ?sexEntry   .
> >> > >   ?sexEntry   Sex_DE:EntryName   ?sex .
> >> > >
> >> > >   ?indicItem  Item_Medication:PatientID   ?person ;
> >> > >               Item_Medication:EntryName ?takes .
> >> > >   ?indicMed   Medication:ItemID   ?indicItem ;
> >> > >               Medication:MedDictDE ?indicDE .
> >> > >   ?indicDE    Medication_DE:NDC    ?indicNDC .
> >> > >   ?indicCode  NDCcodes:NDC         ?indicNDC ;
> >> > >               NDCcodes:ingredient  6809 .
> >> > >
> >> > >   OPTIONAL {
> >> > >     ?contraItem Item_Medication:PatientID   ?person .
> >> > >     ?contraMed  Medication:ItemID   ?contraItem ;
> >> > >                 Medication:MedDictDE ?contraDE .
> >> > >     ?contraDE   Medication_DE:NDC    ?contraNDC .
> >> > >     ?contraCode NDCcodes:NDC         ?contraNDC ;
> >> > >                 NDCcodes:ingredient  11289
> >> > >   }
> >> > >   FILTER (?dob < "1984-01-01T00:00:00"^^xsd:dateTime &&  
> >> !BOUND(?contraItem))
> >> > > } LIMIT 30
> >> > > ]]
> >> > >
> >> > > yielding:
> >> > > [[
> >> > >  
> >> +---------+---------------------+--------+-------------------------------------------+
> >> > > | person  | dob                 | sex    | takes                    
> >>                   |
> >> > >  
> >> +---------+---------------------+--------+-------------------------------------------+
> >> > > | 1517441 | 1964-09-01 00:00:00 | Female | Glucophage TABS          
> >>                   |
> >> > > | 1517441 | 1964-09-01 00:00:00 | Female | Glucophage TABS          
> >>                   |
> >> > > | 1517000 | 1958-01-01 00:00:00 | Male   | Metformin HCl 500 MG  
> >> Tablet               |
> >> > > | 1517000 | 1958-01-01 00:00:00 | Male   | Metformin HCl 500 MG  
> >> Tablet               |
> >> > > | 1517403 | 1981-05-11 00:00:00 | Male   | Metformin HCl 500 MG  
> >> Tablet               |
> >> > > | 1505583 | 1950-02-25 00:00:00 | Female | Metformin HCl 500 MG  
> >> Tablet               |
> >> > > | 1234561 | 1983-01-02 00:00:00 | Male   | GlipiZIDE-Metformin HCl  
> >> 2.5-250 MG Tablet |
> >> > > | 1234561 | 1983-01-02 00:00:00 | Male   | GlipiZIDE-Metformin HCl  
> >> 2.5-250 MG Tablet |
> >> > > | 1234562 | 1963-12-27 00:00:00 | Female | GlipiZIDE-Metformin HCl  
> >> 2.5-250 MG Tablet |
> >> > > | 1234562 | 1963-12-27 00:00:00 | Female | GlipiZIDE-Metformin HCl  
> >> 2.5-250 MG Tablet |
> >> > > | 1517441 | 1964-09-01 00:00:00 | Female | Glucophage TABS          
> >>                   |
> >> > > | 1517441 | 1964-09-01 00:00:00 | Female | Glucophage TABS          
> >>                   |
> >> > >  
> >> +---------+---------------------+--------+-------------------------------------------+
> >> > > ]]
> >> > >
> >> > >
> >> > > The birthdate limitation is set for < 1984-01-01 in order to eliminate
> >> > >  
> >> +---------+---------------------+------+-------------------------------------------+
> >> > > | person  | dob                 | sex  | takes                      
> >>                 |
> >> > >  
> >> +---------+---------------------+------+-------------------------------------------+
> >> > > | 1234563 | 1983-02-25 00:00:00 | Male | GlipiZIDE-Metformin HCl  
> >> 2.5-250 MG Tablet |
> >> > >  
> >> +---------+---------------------+------+-------------------------------------------+
> >> > >
> >> > > The dupes appear to come from identical Medication.ItemID for probably
> >> > > different dates:
> >> > > [[
> >> > > mysql> select * from Medication where ItemID=10276300039;
> >> > >  
> >> +-------------+-------------+--------------------+-------------+------+--------+------------------------+--------------------+------------+----------------+-----------+
> >> > > | ID          | ItemID      | FormOfMedicationDE | FreqUnitsDE |  
> >> Dose | Refill | RoutOfAdministrationDE | QuantityToDispense |  
> >> DaysToTake | PrescribedByID | MedDictDE |
> >> > >  
> >> +-------------+-------------+--------------------+-------------+------+--------+------------------------+--------------------+------------+----------------+-----------+
> >> > > | 10276300041 | 10276300039 | 0                  |           2 |    
> >>  1 |      0 |                     15 |                  0 |          0  
> >> |        1524566 |     90346 |
> >> > > | 10307800003 | 10276300039 | 0                  |           2 |    
> >>  1 |      0 |                     15 |                  0 |          0  
> >> |        1524566 |     90346 |
> >> > >  
> >> +-------------+-------------+--------------------+-------------+------+--------+------------------------+--------------------+------------+----------------+-----------+
> >> > > ]]
> >> > > Fixing date ranges in the query will help this, I expect.
> >> > >
> >> > >
> >> > > * Eric Prud'hommeaux <eric@w3.org> [2008-10-01 01:32-0400]
> >> > > > Given some data that Helen added to db:
> >> > > >   <http://www.w3.org/2008/04/DiabeticPatientsDataSet/MockPerson.csv>
> >> > > >    
> >> <http://www.w3.org/2008/04/DiabeticPatientsDataSet/MockMedication.csv>
> >> > > >    
> >> <http://www.w3.org/2008/04/DiabeticPatientsDataSet/MockItem_Medication.csv>
> >> > > > and the latest version of SWObjects:
> >> > > >   <http://www.w3.org/2008/04/SPARQLfed/>
> >> > > > I tested the SPARQL-SQL mapping on a sample query
> >> > > >   tests/execute_HealthCare1 tests/query_stem:Person.rq -s  
> >> http://hospital.example/DB/
> >> > > >   <http://www.w3.org/2008/04/SPARQLfed/tests/query_stem:Person.rq>
> >> > > >
> >> > > > got an SQL query:
> >> > > > [[
> >> > > > SELECT person.id AS person, person.DateOfBirth AS dob,  
> >> sexEntry.EntryName AS sex, medication.id AS medication,  
> >> opt1.contraIndic AS contraIndic
> >> > > >        FROM Person AS person
> >> > > >             INNER JOIN Sex_DE AS sexEntry ON  
> >> sexEntry.id=person.SexDE
> >> > > >             INNER JOIN Item_Medication AS medication ON  
> >> medication.PatientID=person.id AND  
> >> medication.EntryName="GlipiZIDE-Metformin HCl 2.5-250 MG Tablet"
> >> > > >             LEFT OUTER JOIN (
> >> > > >     SELECT contraIndic.PatientID AS person, contraIndic.id AS  
> >> contraIndic
> >> > > >            FROM Item_Medication AS contraIndic
> >> > > >      WHERE contraIndic.EntryName="Warfarin Sodium 5 MG Tablet"
> >> > > >              ) AS opt1 ON opt1.person=person.id
> >> > > >  WHERE (person.DateOfBirth < "1980-01-01 00:00:00" AND  
> >> !(opt1.contraIndic IS NOT NULL))
> >> > > >  LIMIT 10
> >> > > > ]]
> >> > > >
> >> > > > executed it, and got:
> >> > > >  
> >> +---------+---------------------+--------+-------------+-------------+
> >> > > > | person  | dob                 | sex    | medication  |  
> >> contraIndic |
> >> > > >  
> >> +---------+---------------------+--------+-------------+-------------+
> >> > > > | 1234562 | 1963-12-27 00:00:00 | Female | 99999999003 |        
> >> NULL |
> >> > > > | 1234562 | 1963-12-27 00:00:00 | Female | 99999999004 |        
> >> NULL |
> >> > > >  
> >> +---------+---------------------+--------+-------------+-------------+
> >> > > >
> >> > > > I encourage folks to play more. Also, probably time to start  
> >> working on
> >> > > > the construct rules that allow the SPARQL query to work over HL7  
> >> data.
> >> > > >
> >> > > > Holger, could you build a DOS/WIN version of the code and  
> >> distribute it
> >> > > > or make it available to folks who want to help?
> >> > > >
> >> > > > office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
> >> > > > mobile: +1.617.599.3509
> >> > > >
> >> > > > (eric@w3.org)
> >> > > > Feel free to forward this message to any list for any purpose  
> >> other than
> >> > > > email address distribution.
> >> > >
> >> > >
> >> > >
> >> > >
> >> > > office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
> >> > > mobile: +1.617.599.3509
> >> > >
> >> > > (eric@w3.org)
> >> > > Feel free to forward this message to any list for any purpose  
> >> other than
> >> > > email address distribution.
> >> >
> >> >
> >> >
> >> >
> >> > office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
> >> > mobile: +1.617.599.3509
> >> >
> >> > (eric@w3.org)
> >> > Feel free to forward this message to any list for any purpose other than
> >> > email address distribution.
> >>
> >> > PREFIX sdtm: <http://www.sdtm.org/vocabulary#>
> >> > PREFIX spl:  
> >> <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#>
> >> >
> >> > SELECT ?patient ?dob ?sex ?takes ?indicDate # ?indicEnd ?contra
> >> >  WHERE {
> >> >   ?patient a sdtm:Patient ;
> >> >           sdtm:middleName ?middleName ;
> >> >           sdtm:dateTimeOfBirth ?dob ;
> >> >           sdtm:sex ?sex .
> >> >
> >> >   [                   sdtm:subject ?patient ;
> >> >                    sdtm:standardizedMedicationName ?takes ;
> >> >
> >> >                    # nothing by ingredient in sdtm/caBIG/...
> >> >                    spl:activeIngredient [ spl:classCode 6809 ] ;
> >> >           sdtm:startDateTimeOfMedication ?indicDate
> >> >                    # ; sdtm:endDateTimeOfMedication ?indicEnd
> >> >   ] .
> >> > #  OPTIONAL {
> >> > #  [                   sdtm:subject ?patient ;
> >> > #                   sdtm:standardizedMedicationName ?contra ;
> >> > #                   spl:activeIngredient [ spl:classCode 11289 ]
> >> > #         sdtm:effectiveTime [
> >> > #         sdtm:startDateTimeOfMedication ?contraDate
> >> > #                   # ; sdtm:endDateTimeOfMedication   ?contraEnd
> >> > #  ] .
> >> > #  }
> >> > } LIMIT 30
> >> > PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
> >> > PREFIX hl7:  
> >> <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#>
> >> > PREFIX spl:  
> >> <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#>
> >> >
> >> > PREFIX sdtm: <http://www.sdtm.org/vocabulary#>
> >> > PREFIX bridg: <>
> >> > PREFIX caBIG: <>
> >> > PREFIX CDASH: <>
> >> > PREFIX MHONG: <>
> >> > PREFIX dam: <>
> >> >
> >> > CONSTRUCT {
> >> > ?patient
> >> >     a                                                                 
> >>                       sdtm:Patient ;
> >> >     sdtm:middleName                                                   
> >>   ?middleName ;
> >> >     sdtm:dateTimeOfBirth                                    ?dob ;
> >> >     sdtm:sex ?sex .
> >> > [                 a                        sdtm:ConcomitantMedication ;
> >> >                  sdtm:subject   ?patient ;
> >> >                  sdtm:standardizedMedicationName                  
> >> ?takes ;
> >> >
> >> >                  # nothing by ingredient in sdtm/caBIG/...
> >> >                  spl:activeIngredient [ spl:classCode ?ingred ] ;
> >> >                  sdtm:startDateTimeOfMedication ?start
> >> >                  # ; sdtm:endDateTimeOfMedication ?end
> >> >     ] .
> >> > } WHERE {
> >> > ?patient
> >> >     a                                                                 
> >>                       hl7:Person ;
> >> >     hl7:entityName                                                    
> >>   ?middleName ;
> >> >     hl7:livingSubjectBirthTime                                    ?dob ;
> >> >     hl7:administrativeGenderCodePrintName ?sex ;
> >> >     hl7:substanceAdministration                                    [
> >> >                  a                        hl7:SubstanceAdministration ;
> >> >                   hl7:consumable [
> >> >                      hl7:displayName                  ?takes ;
> >> >                      spl:activeIngredient [
> >> >                                   spl:classCode ?ingred
> >> >                      ]
> >> >                  ] ;
> >> >                  hl7:effectiveTime [
> >> >                      hl7:start ?start
> >> >                      # hl7:end   ?end
> >> >                  ]
> >> >     ] .
> >> > }
> >>
> >> > PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
> >> > PREFIX Person: <http://hospital.example/DB/Person#>
> >> > PREFIX Sex_DE: <http://hospital.example/DB/Sex_DE#>
> >> > PREFIX Item_Medication: <http://hospital.example/DB/Item_Medication#>
> >> > PREFIX Medication: <http://hospital.example/DB/Medication#>
> >> > PREFIX Medication_DE: <http://hospital.example/DB/Medication_DE#>
> >> > PREFIX NDCcodes: <http://hospital.example/DB/NDCcodes#>
> >> >
> >> > PREFIX hl7:  
> >> <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#>
> >> > PREFIX spl:  
> >> <http://www.hl7.org/v3ballot/xml/infrastructure/vocabulary/vocabulary#>
> >> >
> >> > CONSTRUCT {
> >> > ?person
> >> >     a                                                                 
> >>                       hl7:Person ;
> >> >     hl7:entityName                                                    
> >>   ?middleName ;
> >> >     hl7:livingSubjectBirthTime                                    ?dob ;
> >> >     hl7:administrativeGenderCodePrintName ?sex ;
> >> >     hl7:substanceAdministration                                    [
> >> >                  a                        hl7:SubstanceAdministration ;
> >> >                   hl7:consumable [
> >> >                      hl7:displayName                  ?takes ;
> >> >                      spl:activeIngredient [
> >> >                                   spl:classCode ?ingred
> >> >                      ]
> >> >                  ] ;
> >> >                  hl7:effectiveTime [
> >> >                      hl7:start ?indicDate
> >> >                      # hl7:end   (?indicDate + ?indicDuration)
> >> >                  ]
> >> >     ] .
> >> > } WHERE {
> >> >   ?person     Person:MiddleName                                       
> >> ?middleName ;
> >> >               Person:DateOfBirth                      ?dob ;
> >> >               Person:SexDE                                        
> >> ?sexEntry   .
> >> >
> >> >   OPTIONAL {
> >> >               ?sexEntry   Sex_DE:EntryName   ?sex .
> >> >   }
> >> >
> >> >   OPTIONAL {
> >> >   ?indicItem  Item_Medication:PatientID                      ?person ;
> >> >               Item_Medication:PerformedDTTM  ?indicDate ;
> >> >               Item_Medication:EntryName                      ?takes .
> >> >   ?indicMed   Medication:ItemID                                       
> >> ?indicItem ;
> >> >               Medication:DaysToTake                      
> >> ?indicDuration ;
> >> >               Medication:MedDictDE                      ?indicDE .
> >> >   ?indicDE    Medication_DE:NDC                                       
> >> ?indicNDC .
> >> >   }
> >> >
> >> >   OPTIONAL {
> >> >   ?indicCode  NDCcodes:NDC         ?indicNDC ;
> >> >               NDCcodes:ingredient  ?ingred .
> >> >   }
> >> > } LIMIT 30
> >>
> >>
> >>
> >>
> >>
> >> office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
> >> mobile: +1.617.599.3509
> >>
> >> (eric@w3.org)
> >> Feel free to forward this message to any list for any purpose other than
> >> email address distribution.
> >>
> >> There are subtle nuances encoded in font variation and clever layout
> >> which can only be seen by printing this message on high-clay paper.
> 


-- 
-eric

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Received on Wednesday, 25 February 2009 15:46:42 GMT

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