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Re: Is there a benchmark of triple-stores with a "bias" to Life Sciences ?

From: Kei Cheung <kei.cheung@yale.edu>
Date: Fri, 13 Feb 2009 23:14:08 -0500
Message-ID: <49964510.50505@yale.edu>
To: Alistair Miles <alistair.miles@zoo.ox.ac.uk>
CC: Andrea Splendiani <andrea.splendiani@bbsrc.ac.uk>, public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>

>The flybase dataset doesn't contain any of the sequence data, and we
>haven't tried querying residue sequences from within SPARQL
>yet. However, this is something we will need to do for a related
>project very shortly, so any experience or ideas you have would be
>very interesting to us. Querying residue sequences is not the most
>natural thing for SPARQL, so I anticipate some performance issues.

Sequence Ontology (http://genomebiology.com/2005/6/5/R44) might have a 
role to play here.

Received on Saturday, 14 February 2009 04:14:55 UTC

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