- From: Kei Cheung <kei.cheung@yale.edu>
- Date: Mon, 14 Jul 2008 15:05:50 -0400
- To: Peter Ansell <ansell.peter@gmail.com>
- Cc: Matthias Samwald <samwald@gmx.at>, w3c semweb hcls <public-semweb-lifesci@w3.org>
Just want to use the brain as an example: Wikipedia page: http://en.wikipedia.org/wiki/Cerebrum DBpedia page: http://dbpedia.org/page/Cerebrum SPARQL query through DPpedia's SNORQL interface: http://dbpedia.org/snorql/?query=SELECT+%3Fbrainregion+WHERE+%7B%0D%0A++%3Fbrainregion+skos%3Asubject+%0D%0A++++%3Chttp%3A%2F%2Fdbpedia.org%2Fresource%2FCategory%3ACerebrum%3E%0D%0A%7D Cheers, -Kei Peter Ansell wrote: > The edit link for that template page is on the proteins page, you just > have to know which one to click, above and right of the infobox. It > isn't obvious though! > > Cheers, > > Peter > > 2008/7/14 Matthias Samwald <samwald@gmx.at>: > >> Oh, I see. The link to this other page should be mentioned in the comments >> of the original wiki page, since it is rather unlikely that a researcher >> that wants to quickly update the protein box has the motivation to find out >> how he can actually reach that other page. >> >> ~~ Matthias >> >> >>> The Protein Box Bot [1] inserts templates based on the geneid that is >>> given to it, in particular for that page it inserts a template from >>> another page [2]. Editing that page customises the output that is seen >>> in the infobox on that page. It should be relatively simple to take >>> the pages like [2] and retrieve semantic information from them. >>> >>> Cheers, >>> >>> Peter >>> >>> [1] http://en.wikipedia.org/w/index.php?title=Template:PBB&action=edit >>> [2] >>> http://en.wikipedia.org/w/index.php?title=Template:PBB/1605&action=edit >>> >>> 2008/7/14 Matthias Samwald <samwald@gmx.at>: >>> >>>> It is not surprising that the protein/gene information is missing from >>>> DBpedia. Looking at >>>> http://en.wikipedia.org/w/index.php?title=Dystroglycan&action=edit >>>> it seems like this information is not held in the source of the wiki >>>> page. >>>> Maybe someone with better knowledge about Mediawiki could explain how >>>> this >>>> works and how the information could be harvested by DBpedia? I am >>>> planning >>>> to write a documentation for the DBpedia developers that could help them >>>> improve the representation of biomedical wiki entries in DBpedia (such as >>>> creating direct links to the URIs of Uniprot-RDF). This could also be a >>>> helpful addition. >>>> >>>> Cheers, >>>> Matthias Samwald >>>> DERI Galway, Ireland // Semantic Web Company, Austria >>>> >>>> >>>> >>>> >>>> ----- Original Message ----- From: "Peter Ansell" >>>> <ansell.peter@gmail.com> >>>> To: "w3c semweb hcls" <public-semweb-lifesci@w3.org> >>>> Sent: Monday, July 14, 2008 8:48 AM >>>> Subject: Re: 'Gene WIki' announced >>>> >>>> >>>> >>>>> When Francois Belleau was investigating integrating the infobox >>>>> information into Bio2RDF he found that the infoboxes were missing in >>>>> the dbpedia database. Not sure if that changed since he last checked. >>>>> >>>>> It would be very valuable to have the information from infoboxes and >>>>> the gene-wiki templates in dbpedia. Might need to do a custom parser >>>>> for the gene-wiki templates if they aren't similar to infoboxes. >>>>> >>>>> Cheers, >>>>> >>>>> Peter >>>>> >>>>> 2008/7/14 Kei Cheung <kei.cheung@yale.edu>: >>>>> >>>>>> According to http://wiki.dbpedia.org/Datasets#h18-11, DBpedia contains >>>>>> data >>>>>> extracted from infoboxes (which should include gene/protein infoboxes). >>>>>> >>>>>> -Kei >>>>>> >>>>>> Matthias Samwald wrote: >>>>>> >>>>>> >>>>>>> It seems like the protein/gene infoboxes are not reflected in DBpedia, >>>>>>> since the information is not held in conventional infoboxes (as far as >>>>>>> I >>>>>>> have understood). >>>>>>> >>>>>>> Compare >>>>>>> >>>>>>> http://dbpedia.org/page/Dystroglycan >>>>>>> http://en.wikipedia.org/wiki/Dystroglycan >>>>>>> >>>>>>> ----- Original Message ----- From: "Kei Cheung" <kei.cheung@yale.edu> >>>>>>> >>>>>>> What about DBpedia (http://dbpedia.org)? >>>>>>> >>>>>>> -Kei >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>> >>>> >> >> > >
Received on Monday, 14 July 2008 19:06:36 UTC