W3C home > Mailing lists > Public > public-semweb-lifesci@w3.org > August 2008

Re: Demo Scenarios for COI Demo

From: <helen.chen@agfa.com>
Date: Tue, 26 Aug 2008 10:59:22 -0400
To: VKASHYAP1@PARTNERS.ORG
Cc: public-hcls-coi@w3.org, "w3c semweb HCLS" <public-semweb-lifesci@w3.org>, public-semweb-lifesci-request@w3.org
Message-ID: <OF41A1206C.C032E338-ON852574B1.00505ED1-852574B1.0052562B@agfa.com>
Vipul

A few quick remarks about your demo scenarios:

I understand that the COI demo is meant to demonstrate how the following 
two types of boundaries between research (clinical trials) and clinical 
practice (healthcare data) are bridged:

1.  Clinical trial (research) vocabularies (we made clinical trial 
ontology) to healthcare data (we made clinical practice ontology and made 
mapping to HL7 vocabulary/ontology). 

2. High level drug class concepts to detailed patients prescription data 
with NDC codes.

The bridges include such tools as "concept mapping, for example, 
owl:sameAs or owl:equvilantClassOf", and inference rules, for example: 

#check all drugs that "may_treat  obese"
#{?A rdfs:subClassOf  ?B;
#    rdfs:label  ?D.
# ?B  a owl:Restriction;
#     owl:onProperty :may_treat;
#     owl:someValuesFrom :C0028754}
#=>
#{
# ?A  a   :CTDrugName}. 


In the patient data we have for the COI demo, there is no "RxNorm" codes. 
We needs to state how we made the searching viable from ontology concepts 
-> RxNorm ingredients code -> NDC drug code -> patient prescription data

Will talk to you at the Tcon today. 

Kind Regards,

Helen Chen | Agfa HealthCare
Senior Researcher | HE/Advanced Clinical Applications Research
T  +1 519 746 6210 Ext.3186 | M  +1 647 400 1523

Agfa HealthCare Inc., 455 Phillip Street, Waterloo, ON N2L 3X2, Canada
http://www.agfa.com/healthcare/
Click on link to read important disclaimer: 
http://www.agfa.com/healthcare/maildisclaimer



"Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG> 
Sent by: public-semweb-lifesci-request@w3.org
25/08/2008 04:12 PM

To
<public-hcls-coi@w3.org>
cc
"w3c semweb HCLS" <public-semweb-lifesci@w3.org>
Subject
Demo Scenarios for COI Demo








First draft of demo scenarios is attached with this e-mail. 
---Vipul 
<<Demo Scenarios.txt>> 

The information transmitted in this electronic communication is intended 
only
for the person or entity to whom it is addressed and may contain 
confidential
and/or privileged material. Any review, retransmission, dissemination or 
other
use of or taking of any action in reliance upon this information by 
persons or
entities other than the intended recipient is prohibited. If you received 
this
information in error, please contact the Compliance HelpLine at 
800-856-1983 and
properly dispose of this information.


[attachment "Demo Scenarios.txt" deleted by Helen Chen/AMPJB/AGFA] 
Received on Tuesday, 26 August 2008 15:05:12 GMT

This archive was generated by hypermail 2.3.1 : Tuesday, 26 March 2013 18:00:53 GMT