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Re: Re: broken links and other publication logistics for the KB and SenseLab documents

From: Eric Prud'hommeaux <eric@w3.org>
Date: Fri, 4 Apr 2008 10:51:18 -0400
To: Jonathan Rees <jar@creativecommons.org>
Cc: Alan Ruttenberg <alanruttenberg@gmail.com>, "M. Scott Marshall" <marshall@science.uva.nl>, public-semweb-lifesci@w3.org
Message-ID: <20080404145118.GE7328@w3.org>
* Jonathan Rees <jar@creativecommons.org> [2008-03-10 09:21-0400]
> On Sat, Mar 8, 2008 at 3:45 PM, Eric Prud'hommeaux <eric@w3.org> wrote:
> 
> > Alan, I believe you are the interface for these unregistered PURLS.
> >  http://purl.org/commons/hcls/goa
> >  http://purl.org/science/protein/subjects/
> >  http://purl.org/science/record/homologene/cluster_r54_99949
> 
> 
> Actually I was the one who set up all the purls. I will take care of these
> soon, probably within a week.

Checking now, I see 404s on these. How soon can you fix these (WG was
expecting pub this week so some urgency)?

> >
> > The third one requires a rewrite rule and I haven't gotten my purl
> > account (ericP)approved so I can't fiddle with the interfaces.
> 
> 
> It's under the science commons (/science/) purl domain that you don't
> administer, so an account isn't sufficient. I have access so I can set these
> up as well.
> 
> (Lack of resolution doesn't make a URI meaningless; it just makes finding
> its meaning more difficult.)
> 
> >
> > (If we tried to use SC's existing purl page, we resolve
> > <cluster_r54_99949> against
> > <
> > http://sw.neurocommons.org/cgi-bin/about-303?ref=/science/protein/bysequence/
> > >,
> > giving us <http://sw.neurocommons.org/cgi-bin/r54_99949>
> >
> > http://hcls1.csail.mit.edu:8890/map/ is now broken. Is there an update
> > for this linke? or should we remove reference:
> > [[
> > <p>Below are a few visual interfaces that make it possible to browse the
> > results of a search on the knowledgebase:</p>
> > <ul>
> >  <li><a href="http://hcls1.csail.mit.edu:8890/map/#Kcnip3@2850,Kcnd1@2800">Prototype
> > of a Google-Maps interface</a> to the Allen Brain Atlas.</li>
> >  ...
> > ]]
> 
> 
> As we discussed last December the hcls1 and hcls2 hostnames are now the
> responsibility of W3C. Please set them up however you like.
> 
> http://svn.neurocommons.org/svn/ gives a 500 error. Is that script broken?
> 
> That URL should be http://svn.neurocommons.org/svn/trunk/, as the root of
> the repository is protected.
> 
>  Scott, did you mean to include snapshots of all the RDF and OWL data
> > in the publication? I saw lots of broken relative links from Appendix
> > A RDF Sources.
> >  bams-from-swanson-98-4-23-07.owl
> >  senselab.tgz
> >  mesh07-eswc06.rdfs
> >  medline/medline-mesh.tgz
> >  homologene.tgz
> >  goa-in-owl.tgz
> >  mesh-qualified-headings.ttl.gz
> >  sciencecommons.owl
> >  neurocommons-text-mining.tgz
> >  aba-2007-08-07.tgz
> >  mesh-skos.tgz
> >  gene-pubmed.ttl.tgz
> >  galen.tgz
> >  obo-in-owl.tgz
> >  obo-all.tgz
> >  addgene.ttl
> >  medline/medline-titles.tgz
> >  gene-owl.tgz
> >
> Science Commons is having server hardware trouble. Our provision of these
> files (http://sw.neurocommons.org/2007/kb-sources/) should be repaired
> within a week.
> Note that out of respect to NLM's wishes the medline files will continue to
> be protected. Anything you say about them is likely to be unrepeatable.
> 
> - Show quoted text -
> >
> > I found the first one at
> >  http://hissa.nist.gov/jb/biordf-demo/bams-from-swanson-98-4-23-07.owl
> > but decided that you might have plans for the bulk of these.
> >
> > Note to self:
> > http://www.ebi.ac.uk/ego/DisplayGoTerm is broken right now. I'm hoping
> > that's transient, and will resolve itself by Monday.
> >
> > All:
> > Sorry about the publication delays. I think we can publish on Monday if
> > all
> > of these get resolved. Here are the SOTDs I have queued:
> >
> > KB
> > [[
> > This is a First Public Working Draft of the Semantic Web in Health
> > Care and Life Sciences Interest Group (HCLS), part of the W3C Semantic
> > Web Activity. This document documents the construction and use of the
> > HCLS Knowledgebase used in the WWW2007 Banff HCLS Demo. It describes
> > the process for creating a bilogical database on the Semantic Web.
> >
> > Please send all comments on either of these documents to
> > public-semweb-lifesci@w3.org, a mailing list with a public archive,
> > though the IG does not promise explicit responses to each
> > comment. Publication of this document as an Interest Group Note is
> > planned for early April 2008; timely comments are appreciated. Areas
> > marked with "@@" are known to be incomplete, however, any suggestions
> > in these areas are still appreciated.
> > ]]
> >
> > SenseLab
> > [[
> > This is a First Public Working Draft of the Semantic Web in Health
> > Care and Life Sciences Interest Group (HCLS), part of the W3C Semantic
> > Web Activity. This document serves as a companion to the HCLSIG
> > Knowldege Base and describes the process for integrating new data into
> > an existing bilogical fdatabase.
> >
> > Please send all comments on either of these documents to
> > public-semweb-lifesci@w3.org, a mailing list with a public archive,
> > though the IG does not promise explicit responses to each
> > comment. Publication of this document as an Interest Group Note is
> > planned for early April 2008; timely comments are appreciated.
> > ]]
> >
> > If anyone would like to invite particular feedback on parts of these
> > documents, I should put that in the SOTD.
> > --
> > -eric
> >
> > office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
> > mobile: +1.617.599.3509
> >
> > (eric@w3.org)
> > Feel free to forward this message to any list for any purpose other than
> > email address distribution.
> >
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> >
> >
> Jonathan

-- 
-eric

office: +1.617.258.5741 32-G528, MIT, Cambridge, MA 02144 USA
mobile: +1.617.599.3509

(eric@w3.org)
Feel free to forward this message to any list for any purpose other than
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Received on Friday, 4 April 2008 14:51:59 UTC

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