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Clinical Trial Eligibility draft ontology - a start

From: Helen Chen <helen.chen@agfa.com>
Date: Mon, 15 Oct 2007 23:14:02 -0400
To: VKASHYAP1@PARTNERS.ORG
Cc: "Bron W. Kisler" <bkisler@earthlink.net>, "Joey Coyle" <joey@xcoyle.com>, "Landen Bain" <lbain@topsailtech.com>, public-hcls-dse@w3.org, "public-semweb-lifesci hcls" <public-semweb-lifesci@w3.org>, public-semweb-lifesci-request@w3.org, "Stanley Huff" <Stan.Huff@intermountainmail.org>, "Oniki, Tom (GE Healthcare, consultant)" <Tom.Oniki@ge.com>, "Yan Heras" <Yan.Heras@intermountainmail.org>
Message-ID: <OF13A9AE8F.DB3092EE-ON85257376.00108325-85257376.0011C469@agfa.com>
Vipul and all

Rachel and I started to work on a very rough draft of CT Eligibility 
ontology.  This is only a beginning and provides a starting point for some 
discussion.  We looked at the eligibility listed in the sample trials 
outlined in Rachel's use cases.  We can refine the ontology according to 
your functional requirements along the way.  Maybe it is still too early 
to talk about the demo, but the ontology may evolve into something we can 
use in the demo. 

I updated the draft version on wiki page here

http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM?action=AttachFile&do=get&target=CTEligibility.owl

This ontology uses some OWL1.1 constructs and pellet 1.5 should be able to 
classify
 
Helen






"Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG> 
Sent by: public-semweb-lifesci-request@w3.org
10/15/2007 10:20 PM

To
"public-semweb-lifesci hcls" <public-semweb-lifesci@w3.org>, 
<public-hcls-dse@w3.org>
cc
"Stanley Huff" <Stan.Huff@intermountainmail.org>, "Yan Heras" 
<Yan.Heras@intermountainmail.org>, "Oniki, Tom (GE Healthcare, 
consultant)" <Tom.Oniki@ge.com>, "Joey Coyle" <joey@xcoyle.com>, "Landen 
Bain" <lbain@topsailtech.com>, "Bron W. Kisler" <bkisler@earthlink.net>
Subject
Clinical Research Protocols: Fucntional Requirements







Hi,
 
An initial functional requirements document is attached with this e-mail.
It has also been posted on the wiki.
 
Look forward to a good discussion tomorrow.
 
Cheers,
 
---Vipul
 

From: public-hcls-dse-request@w3.org 
[mailto:public-hcls-dse-request@w3.org] On Behalf Of Kashyap, Vipul
Sent: Tuesday, October 09, 2007 12:42 PM
To: public-semweb-lifesci hcls; public-hcls-dse@w3.org
Cc: Stanley Huff; Yan Heras; Oniki, Tom (GE Healthcare, consultant); Joey 
Coyle; Landen Bain; Bron W. Kisler
Subject: [BIONT-DSE][COI] Clinical Observations Interoperability Telcon 
October 16th, Tuesday 11:00am - 12:00pm US EDT
 
Clinical Observations Interoperability Telcon
 
http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM
 
Date and Time:
October 16th, Tuesday 11:00am ? 12:00pm EDT
 
Agenda
1.   Semantic Web Related questions from Landen Bain, Bron Kissler and Tom 
Oniki ? Alan to post minutes and discuss feedback
2.   Functional Requirements distillation from Rachel?s Use Cases: Vipul
3.   Discuss approach Model Evaluation wrt Functional Requirements ? 
Stan/Tom, Bo/Kerstin, Alan
4.   Next Steps: Discuss Terminology Issues
5.   Next Steps: Identify Technical Tasks
6.   Feedback and Refinement of F2F Agenda?
     
http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM/November07F2FAgenda.html 

 
Telcon Details:
 

Phone
+1 617 761 6200, conference 24668 ("BIONT")
IRC
irc://irc.w3.org:6665/hcls
Browser-based IRC client
http://www.w3.org/2001/01/cgi-irc
 
 
Feel free to annotate wiki page above with feedback and suggestions.
 
Cheers,
 
---Vipul
 
=======================================
Vipul Kashyap, Ph.D.
Senior Medical Informatician
Clinical Informatics R&D, Partners HealthCare System
Phone: (781)416-9254
Cell: (617)943-7120
http://www.partners.org/cird/AboutUs.asp?cBox=Staff&stAb=vik
 
To keep up you need the right answers; to get ahead you need the right 
questions
---John Browning and Spencer Reiss, Wired 6.04.95
 
 
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Received on Tuesday, 16 October 2007 03:14:30 GMT

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