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Re: URL +1, LSID -1

From: Eric Jain <Eric.Jain@isb-sib.ch>
Date: Wed, 11 Jul 2007 09:53:27 +0200
Message-ID: <46948C77.1080707@isb-sib.ch>
To: Alan Ruttenberg <alanr@mumble.net>
CC: Michel_Dumontier <Michel_Dumontier@carleton.ca>, public-semweb-lifesci <public-semweb-lifesci@w3.org>, Mark Wilkinson <markw@illuminae.com>, Benjamin Good <goodb@interchange.ubc.ca>, Natalia Villanueva Rosales <naty.vr@gmail.com>

Alan Ruttenberg wrote:
> On Jul 11, 2007, at 3:16 AM, Eric Jain wrote:
>> http://purl.uniprot.org/uniprot/P12345 does not identify an RDF 
>> resource, it represents our concept of some protein.
> 
> What concept would that be? What are instances of the class of proteins 
> that this identifiers denotes?
> 
> (serious question)

Some resources are quite simple and straightforward to understand, e.g. 
http://purl.uniprot.org/uniparc/UPI00001328C5 represents a specific amino 
acid sequence, and e,g, http://purl.uniprot.org/taxonomy/9606 represents a 
specific organism (though there are some complications there, too...)

The resources in the http://purl.uniprot.org/uniprot/ namespace are a bit 
more complicated, basically it's annotation for a sequence in an organism:

http://purl.uniprot.org/uniprot/P60484 (Human)
http://purl.uniprot.org/uniprot/P60483 (same sequence, but Dog)

...but these resources may also include annotation for related sequences 
produced e.g. by alternative splicing:

http://purl.uniprot.org/uniprot/P00750 (Human, 3 sequences)

...provided the function of the resulting sequences are not so different 
that they warrant resources of their own...
Received on Wednesday, 11 July 2007 07:54:13 GMT

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