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Re: use case draft____RE: [BIONT-DSE] Clinical Observations Interoperability Telcon August 28th, Tuesday 11:00am - 12:00pm US EDT

From: Alan Rector <rector@cs.man.ac.uk>
Date: Tue, 28 Aug 2007 08:20:56 +0100
Message-Id: <367F68BB-2028-4EA9-919C-F55AC716C7EA@cs.man.ac.uk>
Cc: Rachel Richesson <Rachel.Richesson@epi.usf.edu>, "Kashyap, Vipul" <VKASHYAP1@PARTNERS.ORG>, <public-semweb-lifesci@w3.org>, <public-hcls-dse@w3.org>, "Stanley Huff" <Stan.Huff@intermountainmail.org>, "Yan Heras" <Yan.Heras@intermountainmail.org>, "Oniki, Tom \(GE Healthcare, consultant\)" <Tom.Oniki@ge.com>, "Joey Coyle" <joey@xcoyle.com>, "Landen Bain" <lbain@topsailtech.com>, "Bron W. Kisler" <bkisler@earthlink.net>, "Eric Neumann" <eneumann@teranode.com>
To: Alan Ruttenberg <alanruttenberg@gmail.com>

Alan, All

Just a marker fort now.  It would be useful to coordinate this with  
work on the clinical trials ontology, OCRe which is being developed  
in conjunction with Ida Sim at TrialBank, the UK CancerGrid Project,  
Samson Tu at Stanford.

I am not likely to make the telecon today - just baack from holiday  
and found this by accident.  I'll try to find out later.

Regards

Alan Rector

On 27 Aug 2007, at 20:18, Alan Ruttenberg wrote:

>
> In case it's of interest, I did a small prototype of how one might  
> evaluate the sort of criteria, in OWL, that Rachel describes in her  
> attachment. The post about it is here:
>
> http://lists.w3.org/Archives/Public/public-semweb-lifesci/2007Feb/ 
> 0076.html
>
> Subject: counted inclusion + exclusion criteria in OWL
>
> This only addresses the technical issue of how to write the rule.  
> It doesn't questions of necessary vocabulary, that would be needed  
> to handle the use case Rachel suggests, just how to put them  
> together once you have it.
>
> Regards,
> Alan
>
> On Aug 27, 2007, at 2:16 PM, Rachel Richesson wrote:
>
>>
>>
>> I am attaching some background information on the use case for  
>> discussion on tomorrow at 11 eastern.
>>
>>
>>
>> I will do my best to lead the call and get feedback on the context  
>> of the use case, and the constructs that might be of most  
>> interest. The attached document describes the idea of querying EMR  
>> data for patients potentially eligible for a given research  
>> protocol, and includes the eligibility criteria from 3 breast  
>> cancer studies that are listed on ClinicalTrials.gov. These  
>> examples illustrate the many constructs (lab, findings, history,  
>> procedures, diagnosis, mutation….) that are found in “eligibility”  
>> criteria, which is a big challenge for the group. I think some  
>> discussion and consensus from the group will help to focus a  
>> general use case over the next few weeks.
>>
>> I hope that Landen and Bron (from CDISC) can then elaborate on  
>> which CDISC standards might be most applicable here, and perhaps  
>> see how this context relates to an earlier demo on EMR-CDISC  
>> harmonization that was conducted at HIMSS last year.
>>
>>
>>
>>
>>
>> Thanks,
>> Rachel
>>
>>
>>
>>
>>
>> From: public-semweb-lifesci-request@w3.org [mailto:public-semweb- 
>> lifesci-request@w3.org] On Behalf Of Kashyap, Vipul
>> Sent: Monday, August 27, 2007 9:56 AM
>> To: public-semweb-lifesci@w3.org; public-hcls-dse@w3.org
>> Cc: Stanley Huff; Yan Heras; Oniki, Tom (GE Healthcare,  
>> consultant); Joey Coyle; Landen Bain; Bron W. Kisler; Eric Neumann
>> Subject: [BIONT-DSE] Clinical Observations Interoperability Telcon  
>> August 28th, Tuesday 11:00am - 12:00pm US EDT
>>
>>
>>
>> Clinical Observations Interoperability Telcon
>>
>>
>>
>> http://esw.w3.org/topic/HCLS/OntologyTaskForce/BIONTDSEDCM
>>
>>
>>
>> Date and Time:
>>
>> August 28th, Tuesday 11:00am – 12:00pm US EDT
>>
>>
>>
>> Agenda:
>>
>> 1.                   Presentation and Discussion of Use Case:  
>> Rachel Richesson
>>
>> 2.                   Presentation of CDISC Standards and  
>> Activities Relevant to this Activity – Landen Bain (CDISC liaison  
>> for Healthcare)
>>
>>
>>
>> Telcon Details:
>>
>>
>>
>> Phone
>>
>> +1 617 761 6200, conference 24668 ("BIONT")
>>
>> IRC
>>
>> irc://irc.w3.org:6665/hcls
>>
>> Browser-based IRC client
>>
>> http://www.w3.org/2001/01/cgi-irc
>>
>>
>>
>>
>>
>> Feel free to annotate wiki page above with feedback and suggestions.
>>
>>
>>
>> Cheers,
>>
>>
>>
>> ---Vipul
>>
>>
>>
>> =======================================
>>
>> Vipul Kashyap, Ph.D.
>>
>> Senior Medical Informatician
>>
>> Clinical Informatics R&D, Partners HealthCare System
>>
>> Phone: (781)416-9254
>>
>> Cell: (617)943-7120
>>
>> http://www.partners.org/cird/AboutUs.asp?cBox=Staff&stAb=vik
>>
>>
>>
>> To keep up you need the right answers; to get ahead you need the  
>> right questions
>>
>> ---John Browning and Spencer Reiss, Wired 6.04.95
>>
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>> <use case background_W3C Life Sciences_8-27-07.doc>
>
>

-----------------------
Alan Rector
Professor of Medical Informatics
School of Computer Science
University of Manchester
Manchester M13 9PL, UK
TEL +44 (0) 161 275 6149/6188
FAX +44 (0) 161 275 6204
www.cs.man.ac.uk/mig
www.clinical-esciences.org
www.co-ode.org
Received on Tuesday, 28 August 2007 08:39:46 GMT

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