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Re: [rdf] Re: proposal for standard NCBI database URI

From: Mark Wilkinson <markw@illuminae.com>
Date: Tue, 09 May 2006 09:16:15 -0700
To: larry.hunter@uchsc.edu
Cc: Alan Ruttenberg <alanruttenberg@gmail.com>, public-semweb-lifesci@w3.org
Message-Id: <1147191375.16114.55.camel@bioinfo.icapture.ubc.ca>

Hmmmm.... yeah, that's true... but my "gut" does a back-flip when I am
forced to use a URI that refers to a web page, complete with fancy NCBI
decorations and menu's :-)  

I think what we are REALLY looking for is an identifier of a data-
entity, independent of its representation.  This is what the LSIDs do
for us so nicely, since they can refer to "conceptual" entities with the
various possible representations being referred to in the metadata.

M





On Tue, 2006-05-09 at 09:59 -0600, Larry Hunter wrote:
> On Tue, 2006-05-09 at 00:00 -0400, Alan Ruttenberg wrote:
> > As far as I know there is no standard URI for a resource at NCBI. 
> 
> Ah, but there is:
> 
>   http://www.ncbi.nlm.nih.gov/entrez/query/static/linking.html
> 
> Given that this structure covers many quite distinct databases, it's a
> bit more complicated than what you propose, but it's serviceable.
> 
> Larry
> 
-- 

--
Mark Wilkinson
Asst. Professor, Dept. of Medical Genetics
University of British Columbia
PI in Bioinformatics, iCAPTURE Centre
St. Paul's Hospital, Rm. 166, 1081 Burrard St.
Vancouver, BC, V6Z 1Y6
tel: 604 682 2344 x62129
fax: 604 806 9274

"For most of this century we have viewed communications as a conduit, 
       a pipe between physical locations on the planet. 
What's happened now is that the conduit has become so big and interesting 
      that communication has become more than a conduit, 
       it has become a destination in its own right..."

                Paul Saffo - Director, Institute for the Future
Received on Tuesday, 9 May 2006 16:16:25 GMT

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