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RE: scientific publishing task force update

From: Miller, Michael D (Rosetta) <Michael_Miller@Rosettabio.com>
Date: Mon, 12 Jun 2006 08:42:12 -0700
To: "kei cheung" <kei.cheung@yale.edu>
cc: public-semweb-lifesci@w3.org
Message-ID: <E1FpoYa-0005SU-Uk@maggie.w3.org>

Hi All,

> It might be interesting to compare this with FUGE.

Yes, there's definite overlap.

Also wanted to pass along one of the top-level classes:

"<owl:Class
rdf:about="http://www.hozo.jp/owl/EXPOApr19.xml/EperimentalDesignTask">"

I'm not exactly sure what "Eperimental" means!

cheers,
Michael

> -----Original Message-----
> From: public-semweb-lifesci-request@w3.org 
> [mailto:public-semweb-lifesci-request@w3.org] On Behalf Of kei cheung
> Sent: Monday, June 12, 2006 8:07 AM
> To: William Bug
> Cc: Mark Musen; public-semweb-lifesci@w3.org
> Subject: Re: scientific publishing task force update
> 
> 
> 
> Hi Bill and Mark et al.,
> 
> I also went the EXPO site (http://sourceforge.net/projects/expo/) and 
> found the EXPO ontology in OWL format (I agree that it's 
> quite hidden). 
> I have unzipped it and make it available at:
> 
> http://twiki.med.yale.edu/kei_web/sw_group/EXPO04-19-06.owl
> 
> It might be interesting to compare this with FUGE.
> 
> Cheers,
> 
> -Kei
> 
> William Bug wrote:
> 
> >
> > This was a new one on me too, Mark.  It was posted to Slashdot the  
> > other day, and the Sorceforge site the article points to is  
> > essentially empty.
> >
> > http://sourceforge.net/projects/expo/
> >
> > As you might gather, EXPO is not a very good term to search in all  
> > the usual suspect search engines - INSPEC, PubMed, IEEE XPlore,  
> > CiteSeer.IST, and Google/Google Scholar.  Only a very few specific  
> > studies using EXPO in the title came up in:
> >
> > PubMed:
> >
> > CT-expo--a novel program for dose evaluation in CT
> > Rofo. 2002 Dec;174(12):1570-6.
> >
> >
> >
> >  INSPEC:
> >
> > The extended Poincare generating function type (EXPO)
> >
> > Extrasolar Planet Observatory (ExPO)
> >
> > EXPO is the integration of two programs, EXTRA and 
> SIRPOW.92 and is a  
> > program for full powder decomposition and crystal structure 
> solution.
> >
> >
> >
> > ACL Anthology of research papers in Comp. Linguistics
> >
> > A FORMAL GRAMMAR OF EXPRESSIVENESS FOR SACRED LEGENDS
> > acl.ldc.upenn.edu/C/C80/C80-1023.pdf
> >
> > (an absolutely fascinating manuscript in no way related to this  
> > research project)
> >
> >
> > There is certainly much interesting and relevant research 
> going on in  
> > this center at the University of Aberystwyth 
> (http://www.aber.ac.uk/ 
> > compsci/Research/bio/grants.shtml), but I wasn't able to find an  
> > specific reference to EXPO anywhere, though clearly it 
> could be the  
> > result of research in any one of several of the projects listed.
> >
> > In the end, I just gave up.
> >
> > Cheers,
> > Bill
> >
> >
> > On Jun 9, 2006, at 1:29 PM, Mark Musen wrote:
> >
> >>
> >> On Jun 8, 2006, at 10:09 PM, AJ Chen wrote:
> >>
> >>> The first task is to develop an ontology for self-publishing of  
> >>> experiment. I have proposed a list of objects and properties  
> >>> related to self-publishing experiment. Please download 
> the  attached 
> >>> file under Task Status and review the proposal. Your  
> feedback and 
> >>> comments will be greatly appreciated.  You may also  edit 
> the file 
> >>> directly and email me the edited file.
> >>>
> >>
> >> A colleague just pointed me to this (rather vacuous) 
> article.  Does  
> >> anyone know more about this work?
> >>
> >> http://www.newscientisttech.com/article/dn9288-translator-lets- 
> >> computers-understand-experiments-.html
> >>
> >> Mark
> >>
> >
> > Bill Bug
> > Senior Analyst/Ontological Engineer
> >
> > Laboratory for Bioimaging  & Anatomical Informatics
> > www.neuroterrain.org
> > Department of Neurobiology & Anatomy
> > Drexel University College of Medicine
> > 2900 Queen Lane
> > Philadelphia, PA    19129
> > 215 991 8430 (ph)
> > 610 457 0443 (mobile)
> > 215 843 9367 (fax)
> >
> >
> > Please Note: I now have a new email - William.Bug@DrexelMed.edu
> >
> >
> >
> >
> >
> >
> >
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> > for your cooperation.
> >
> 
> 
> 
> 
> 
Received on Monday, 12 June 2006 15:42:36 GMT

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