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Re: [HCLS-ACPP] Weekly Tcon today - 1:00-2:00pm

From: chris mungall <cjm@fruitfly.org>
Date: Tue, 1 Aug 2006 12:26:17 -0700
Message-Id: <9D1E4B09-A916-47FF-96BA-A58B883CE4CA@fruitfly.org>
Cc: helen.chen@agfa.com, W3C HCLSIG hcls <public-semweb-lifesci@w3.org>
To: Joanne Luciano <jluciano@genetics.med.harvard.edu>


Note that the GO evidence codes are a subset of the evidence codes  
available on OBO:
http://obo.sourceforge.net/cgi-bin/detail.cgi?evidence_code

On Aug 1, 2006, at 11:19 AM, Joanne Luciano wrote:

>
> Hi,
>
> Here's a short list of Evidence Code / Ontology Links/papers:
>
> 1. SRI/Peter Karp - the BioCyc family of pathway databases:
>
> Paper:   An Evidence Ontology for Use in Pathway/Genome Databases
>
> Their site is apparently down now, but if you go to the site and  
> look at the details of pathways (if I remember correctly) they use  
> icons to indicate the evidence of a particular piece of data in a  
> pathway.
>
> Here's the paper: 	http://psb.stanford.edu/psb-online/proceedings/ 
> psb04/karp.pdf
>
> 2.  The Gene Ontology:
>
> http://www.geneontology.org/GO.evidence.shtml
>
> IC: Inferred by Curator
> IDA: Inferred from Direct Assay
> IEA: Inferred from Electronic Annotation
> IEP: Inferred from Expression Pattern
> IGI: Inferred from Genetic Interaction
> IMP: Inferred from Mutant Phenotype
> IPI: Inferred from Physical Interaction
> ISS: Inferred from Sequence or Structural Similarity
> NAS: Non-traceable Author Statement
> ND: No biological Data available
> RCA: inferred from Reviewed Computational Analysis
> TAS: Traceable Author Statement
> NR: Not Recorded
> 3.  Evidence Based Medicine (http://ebmg.wiley.com/sovellukset/ltk/ 
> ebmgfrontpage.html)
>
> Over 2 500 high-quality evidence summaries supporting the given  
> recommendations  a specific feature of the guidelines is the use  
> of evidence codes (graded from A where strong evidence exists and  
> further research is unlikely to change the conclusion, to D where  
> the evidence is weak and the estimate of effect is uncertain)
>
> Joanne
>
> On Aug 1, 2006, at 12:07 PM, helen.chen@agfa.com wrote:
>
>>
>> ACPP Tcon on Tuesday, August 1
>>
>> SW_HCLS(ACPP)
>> SW Life Sciences IG
>> Tuesdays
>> 1:00pm-2:15pm/17:00-18:15 UTC
>> Zakim Bridge +1.617.761.6200, conference 2277 ("ACPP")
>>
>> Agenda:
>>
>> - Review and Discussion: Representing Diabetes Guideline (Fibrate)  
>> using ontology and rules.
>>
>>
>> Helen
>
Received on Tuesday, 1 August 2006 19:27:00 GMT

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