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Re: [BioRDF] All about the LSID URI/URN

From: Carole Goble <carole@cs.man.ac.uk>
Date: Tue, 01 Aug 2006 05:47:59 +0100
Message-ID: <44CEDCFF.3020407@cs.man.ac.uk>
To: William Bug <William.Bug@DrexelMed.edu>
CC: public-semweb-lifesci hcls <public-semweb-lifesci@w3.org>, Eric Jain <Eric.Jain@isb-sib.ch>, Benjamin H Szekely <bhszekel@us.ibm.com>

Bill

we do, and when Boca comes on line we will play with that too Sean ;-)

Daniele can field further questions - I am really really on holiday now, 
honest!

Carole

> Hi All,
>
> I was following up on Carole's presentation regarding the myGRID use 
> of LSIDs [1 
> <http://www.mygrid.org.uk/index.php?module=pagemaster&PAGE_user_op=view_page&PAGE_id=49&MMN_position=57:51:52>].  
> I wanted to confirm whether they were using the IBM code base [2 
> <http://www-128.ibm.com/developerworks/opensource/library/os-lsid/>][3 
> <http://lsid.sourceforge.net/>].  This post from 2 years back by Chris 
> Roe [4 
> <http://lists.w3.org/Archives/Public/public-semweb-lifesci/2004Apr/0010.html>] 
> does confirm that and gives a little more detail from earlier in the 
> myGRID chronology which provides additional info on what motivated 
> them to use LSIDs.
>
> Cheers,
> Bill
>
> [1] http://www.mygrid.org.uk/index.php?module=pagemaster&PAGE_user_op=view_page&PAGE_id=49&MMN_position=57:51:52 
> <http://www.mygrid.org.uk/index.php?module=pagemaster&PAGE_user_op=view_page&PAGE_id=49&MMN_position=57:51:52>
> [2] http://www-128.ibm.com/developerworks/opensource/library/os-lsid/
> [3] http://lists.w3.org/Archives/Public/public-semweb-lifesci/2004Apr/0010.html 
> <http://lists.w3.org/Archives/Public/public-semweb-lifesci/2004Apr/0010.html>
> [4] http://lists.w3.org/Archives/Public/public-semweb-lifesci/2004Apr/0010.html 
> <http://lists.w3.org/Archives/Public/public-semweb-lifesci/2004Apr/0010.html>
>
>
>
> On Jul 31, 2006, at 1:45 PM, Benjamin H Szekely wrote:
>
>>
>> If we go with Sean's suggestion of an HTTP gateway, you can have one 
>> line of code that looks like:
>>
>> InputStream lsidData = new 
>> URL("http://lsid.info/urn:lsid:ncbi.nlm.nih.gov.lsid.biopathways.org:genbank:32345422").openStream(); 
>>
>>
>> Ben Szekely
>> IBM Software Engineer
>> Advanced Internet Technology, Cambridge, MA
>> bhszekel@us.ibm.com <mailto:bhszekel@us.ibm.com>
>>
>> Eric Jain <Eric.Jain@isb-sib.ch <mailto:Eric.Jain@isb-sib.ch>> wrote 
>> on 07/31/2006 01:30:03 PM:
>>
>> > Benjamin H Szekely wrote:
>> > > The LSID Java Toolkit supports both SOAP and HTTP.   The HTTP 
>> version is
>> > > very simple and does not use Axis.  I believe work is being done 
>> outside
>> > > of development team to implement a more lightweight, HTTP-only 
>> version
>> > > of the LSID Java stack.  
>> >
>> > As far as I am concerned, the resolution mechanism is only 
>> light-weight
>> > enough when it fits into one line of code and doesn't require any 
>> special
>> > libraries :-)
>> >
>
> Bill Bug
> Senior Research Analyst/Ontological Engineer
>
> Laboratory for Bioimaging  & Anatomical Informatics
> www.neuroterrain.org
> Department of Neurobiology & Anatomy
> Drexel University College of Medicine
> 2900 Queen Lane
> Philadelphia, PA    19129
> 215 991 8430 (ph)
> 610 457 0443 (mobile)
> 215 843 9367 (fax)
>
>
> Please Note: I now have a new email - William.Bug@DrexelMed.edu 
> <mailto:William.Bug@DrexelMed.edu>
>
>
>
>
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Received on Tuesday, 1 August 2006 04:48:10 GMT

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