Re: Google Summer of Code

Hi Leyla,

Sorry for the late reply.

Related to the EBI search. I imagine you mean the EBI search summary pages?
Something like this would require the involvement of Rodrigo's team at the
EBI (CCed). I remember in one of Bioschemas workshops we briefly discussed
this as an application. I don't remember who, but I think Rodrigo, Silvano
or Nicola suggested the EBI search summary pages could use Bioschemas as
input. Below 3 ideas I thought could be interesting to be explored by a
student related to this topic. It would be great to count on Rodrigo,
Nicola and Silvano if they are interested.

   1. Demonstrate how the EBI summary results
   <https://www.ebi.ac.uk/s4/summary/molecular?term=VAV_HUMAN&classification=9606&tid=protOrthVAVHUMAN>
   (gene, expression, protein, protein structure and literature) could be
   built consuming Bioschemas from the original data sources. In my opinion
   this would require A.- demonstrating how the contributing EBI resources
   (Ensembl, Expression atlas, Uniprot, ...) can expose the necessary
   information with Bioschemas and B.- demonstrate how to render the summary
   results as they are presented by the EBI search consuming Bioschemas.
   2. Demonstrate how the EBI search result pages could be marked up with
   Bioschemas
   3. Explore and propose a strategy to integrate 3rd party summary data
   via Bioschemas (similar to the idea of Track Hubs and DAS but with
   Bioschemas)

Regards,
Rafa

On 15 Jan 2018 10:51, "Leyla Garcia" <ljgarcia@ebi.ac.uk> wrote:

Hi Alasdair,

I like the Validata project, let me know if I can collaborate somehow with
it.
The EBI search could be done as well using Bioschemas markup so that would
be a possibility as well. I could help redacting the idea behind but I am
afraid not this week. @Rafael, what do you think of this idea? This is
something you have mentioned in the past.

Cheers,


On 11/01/2018 15:54, Gray, Alasdair J G wrote:

Hi All,

We would like to propose Bioschemas as a Google Summer of Code organisation
(deadline 23 January 2018).
https://summerofcode.withgoogle.com/

I have started drafting ideas for projects in a google document, please
feel free to add more project ideas or details to my initial brain dump.
https://docs.google.com/document/d/1_i2vqUfCy1laVbslVR6kjaRL
IUN8Y2nqQIEPT8G68gg/edit

Best regards

Alasdair, Carole, and Rafa

Alasdair J G Gray

Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk
Web: http://www.macs.hw.ac.uk/~ajg33
ORCID: http://orcid.org/0000-0002-5711-4872
Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair

------------------------------

*Heriot-Watt University is The Times & The Sunday Times International
University of the Year 2018*

Founded in 1821, Heriot-Watt is a leader in ideas and solutions. With
campuses and students across the entire globe we span the world, delivering
innovation and educational excellence in business, engineering, design and
the physical, social and life sciences.

This email is generated from the Heriot-Watt University Group, which
includes:

   1. Heriot-Watt University, a Scottish charity registered under number
   SC000278
   2. Edinburgh Business School a Charity Registered in Scotland, SC026900.
   Edinburgh Business School is a company limited by guarantee, registered in
   Scotland with registered number SC173556 and registered office at
   Heriot-Watt University Finance Office, Riccarton, Currie, Midlothian, EH14
   4AS
   3. Heriot- Watt Services Limited (Oriam), Scotland's national
   performance centre for sport. Heriot-Watt Services Limited is a private
   limited company registered is Scotland with registered number SC271030 and
   registered office at Research & Enterprise Services Heriot-Watt University,
   Riccarton, Edinburgh, EH14 4AS.

The contents (including any attachments) are confidential. If you are not
the intended recipient of this e-mail, any disclosure, copying,
distribution or use of its contents is strictly prohibited, and you should
please notify the sender immediately and then delete it (including any
attachments) from your system.