W3C home > Mailing lists > Public > public-bioschemas@w3.org > February 2018

BioChemEntity and Ontology terms

From: Gray, Alasdair J G <A.J.G.Gray@hw.ac.uk>
Date: Tue, 13 Feb 2018 08:47:27 +0000
To: Justin Clark-Casey <justinccdev@gmail.com>
CC: LJ Garcia Castro <ljgarcia@ebi.ac.uk>, "public-bioschemas@w3.org" <public-bioschemas@w3.org>, "Rafael C. Jimenez" <rafael.jimenez@elixir-europe.org>, Carole Goble <carole.goble@manchester.ac.uk>
Message-ID: <0F48B275-91AA-459C-A1E7-A9BDF19F2B44@hw.ac.uk>
Hi Justin,

Sorry for the delay in the response to this question. I’ve been swamped with teaching responsibilities at the start of this semester.

On 29 Jan 2018, at 11:59, Justin Clark-Casey <justinccdev@gmail.com<mailto:justinccdev@gmail.com>> wrote:

On another note, is there a write-up anywhere of what we decided to do for BioChemEntity, especially regarding how existing ontologies were going to be used in the markup?  Something more narrative than spec-oriented (something with examples).  This may be in the mailing list thread but it's hard to extract from there.

We definitely need to do this. We also need to think about guidelines and best practice for developing profiles. My RA, Ken McLeod, has been analysing the specifications with regard to improving the map2model tool. We have vastly different modelling approaches being deployed in the various profiles which is making the tooling harder to develop.

The question is where should we put this information?

Alasdair

Alasdair J G Gray
Fellow of the Higher Education Academy
Assistant Professor in Computer Science,
School of Mathematical and Computer Sciences
(Athena SWAN Bronze Award)
Heriot-Watt University, Edinburgh UK.

Email: A.J.G.Gray@hw.ac.uk<mailto:A.J.G.Gray@hw.ac.uk>
Web: http://www.macs.hw.ac.uk/~ajg33

ORCID: http://orcid.org/0000-0002-5711-4872

Office: Earl Mountbatten Building 1.39
Twitter: @gray_alasdair










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Received on Tuesday, 13 February 2018 08:49:11 UTC

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