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Re: GSoC 2018: Bioschemas application status

From: Carl Boettiger <cboettig@gmail.com>
Date: Tue, 10 Apr 2018 16:00:36 +0000
Message-ID: <CAN_1p9wo7zOj7WYCyh6-No9cTew0vc7GqT=+aK6B0Z20OQT5zw@mail.gmail.com>
To: Paolo Manghi <paolo.manghi@isti.cnr.it>
Cc: Carole Goble <carole.goble@manchester.ac.uk>, public-bioschemas@w3.org, Alessia Bardi <alessia.bardi@isti.cnr.it>, Miriam Baglioni <miriam.baglioni@isti.cnr.it>, Martin Fenner <martin.fenner@datacite.org>
Hi Paolo,

Thanks, these look great, will try and give this a run through when I'm
looking at a larger screen.

I'm looping in Martin Fenner from DataCite since I think he's already done
the mappings for DataCite to codemeta v2 / schema.org,
and may be able to weigh in here too.

Cheers,

Carl

On Tue, Apr 10, 2018 at 2:53 AM Paolo Manghi <paolo.manghi@isti.cnr.it>
wrote:

> Dear Carl and Carole,
>
> Here we are again :) Since our last contact we had very useful
> interactions (and inputs) with DOE CODE (osti.gov) and SSI in the UK. We
> would be therefore extremely glad to complete this picture with Codemeta.
> We hope you can find the time to revise guidelines
> <http://software-guidelines.readthedocs.io/en/latest/index.html> and
> mappings
> <https://docs.google.com/spreadsheets/d/1mKs-Pg_JuLcpqEkQqlSCs2gGC7nEEbhxdTbIoGcU6NI/edit?usp=sharing> at
> the URLs below.
>
> Let us know if there is anything we can do to support you.
>
> Thank you in advance!
>
> Paolo
>
> ----
> Paolo Manghi
> Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR
> Tel: +39 050 621-2038 <+39%20050%20621%202038> - Fax: +39 050 621-3464
> <+39%20050%20621%203464>
> Web page: http://nemis.isti.cnr.it/person/paolo-manghi
> InfraScience Research Group: http://nemis.isti.cnr.it/groups/infrascience
> <http://laboratorio.isti.cnr.it/groups/infrascience>
>
>
>
>
> On 20 Feb,2018, at 14:20 , Paolo Manghi <paolo.manghi@isti.cnr.it> wrote:
>
> Dear Both,
>
> Apologie for the delayed answer and many thanks for making this contact
> possible!
>
> Carl, as OpenAIRE we are working on a light-weight metadata format, mainly
> inspired by DataCite, to describe software citation. We have started from
> DataCite and then looking at how other more software oriented initiatives
> were doing with respect to description for citation/reward properties. The
> main two being CodeMeta and SHARE-OMTD.
>
> You can find a first draft of the guidelines here:
>
> http://software-guidelines.readthedocs.io/en/latest/index.html
>
> with
>
>    - *introduction*:
>    http://software-guidelines.readthedocs.io/en/latest/introduction.html
>    - *application profile*:
>    http://software-guidelines.readthedocs.io/en/latest/application_profile.html
>
>
> You can find here the crosswalks from CodeMeta and OMTD here:
>
>
> https://docs.google.com/spreadsheets/d/1mKs-Pg_JuLcpqEkQqlSCs2gGC7nEEbhxdTbIoGcU6NI/edit?usp=sharing
>
> OpenAIRE is building a citation graph of research products: literature,
> datasets, software and “other products” (e.g. experiments, research
> objects, protocols, workflows). The idea is to leverage Open Science
> publishing principles, favour transparent evaluation and reproducibility,
> by opening up the “hidden part of science". Building this graph involves
> harvesting metadata from thousands of data sources and text mining millions
> of full-texts, to identify links between publications and datasets and
> software products (we collaborate with SoftwareHeritage):
>
>    - *Harvest* We mainly harvest software metadata from institutional
>    publication repositories, where the are described using Dublin Core like
>    standards and often bear a link to the relative software repository.
>    - *Mining*  When we perform mining and find a link to a software
>    repository, as you know we can instead identify very poor metadata
>    properties.
>
> Given the context (software is either NOT described as a research product
> or, when it is, it is not managed as software should be), the idea was to
> identify a minimal set of mandatory properties required to describe a
> research software in OpenAIRE, targeting a pragmatic and citation-oriented
> approach. The main challenge was to decide which properties were in and
> out, keeping in mind our goal, a good dose of pragmatism given what is out
> there at the moment, and giving a glance to the future to push for better
> behaviour.
>
> Best,
>
> Paolo
>
> ----
> Paolo Manghi
> Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR
> Tel: +39 050 621-2038 <+39%20050%20621%202038> - Fax: +39 050 621-3464
> <+39%20050%20621%203464>
> Web page: http://nemis.isti.cnr.it/person/paolo-manghi
> InfraScience Research Group: http://nemis.isti.cnr.it/groups/infrascience
> <http://laboratorio.isti.cnr.it/groups/infrascience>
>
>
>
>
> On 12 Feb,2018, at 19:18 , Carole Goble <carole.goble@manchester.ac.uk>
> wrote:
>
>
> Hi Carl!!
>
> CodeMeta <https://codemeta.github.io/> was being namechecked by the
> openAIRE-Connect <https://www.openaire.eu/connect> project as the basis
> of their software scheme for openAIRE <https://www.openaire.eu/>.  They
> are also keen to link up with Bioschemas.
>
> cheers
>
> Carole
>
>
>
> On 12/02/2018 18:12, Carl Boettiger wrote:
>
> Hi All,
>
> I'd second Carole's proposal (hi Carole!) and would love to see the
> proposed tasks.  (I've only just joined bioschemas so didn't see the GSOC
> proposal; though have enjoyed working with GSOC students on other work in
> years past).
>
> I get a few dozen UC Berkeley undergrad CS students interested in
> independent research projects in this area each semester, way more than I
> have the capacity to work with.  I'd love to connect with potential mentors
> of the BioSchemas group to see if there are any those students who might
> want to work on those tasks. These students get only course credit rather
> than stipends for this, but I think would be interested in connecting to
> the broader bioschemas community as well.  Just a thought, at least  for
> fall 2018 semester if not before.
>
> Cheers!
>
> Carl
>
> http://carlboettiger.info
>
> On Mon, Feb 12, 2018 at 10:03 AM Carole Goble <
> carole.goble@manchester.ac.uk> wrote:
>
>>
>> we could still post these as things we would like doning for folks to
>> pick off
>> carole
>>
>>
>> On 12/02/2018 17:27, Gray, Alasdair J G wrote:
>>
>> Thanks to everyone for their efforts in the Google summer of code
>> proposal. Unfortunately it is bad news.
>>
>> Alasdair
>>
>> Alasdair J G Gray
>> Fellow of the Higher Education Academy
>> Assistant Professor in Computer Science
>> Heriot-Watt University, Edinburgh
>>
>> www.macs.hw.ac.uk/~ajg33 <http://%3Cbr/%3Ewww.macs.hw.ac.uk/%7Eajg33>
>>
>> ------------------------------
>> *From:* Google Summer of Code <summerofcode-noreply@google.com>
>> <summerofcode-noreply@google.com>
>> *Sent:* Monday, February 12, 2018 5:06:08 PM
>> *To:* Gray, Alasdair J G
>> *Subject:* GSoC 2018: Bioschemas application status
>>
>>
>> [image: Google Summer of Code]
>>
>> Thank you for applying to be a Google Summer of Code 2018 mentor
>> organization. Sadly, we were unable to accept Bioschemas this year. We had
>> many more applications than available slots. We hope you will apply again
>> in the future!
>>
>>
>> This email was sent to A.J.G.Gray@hw.ac.uk.
>>
>> You are receiving this email because of your participation in Google
>> Summer of Code 2018.
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>> --
>> Professor Carole Goble CBE FREng FBCS CITP
>> School of Computer Science
>> University of Manchester
>> Manchester, UK
>>
>> tel: +44 161 275 6195 <+44%20161%20275%206195>
>> email: carole.goble@manchester.ac.uk
>> twitter: @CaroleAnneGoble
>> PA: Melanie Price <melanie.j.price@manchester.ac.uk> <melanie.j.price@manchester.ac.uk>
>>
>> PLEASE NOTE: I no longer work weekends. You will not get a response.
>>
>> email etiquette:
>> I get a lot of email and when I travel it gets even more backed up.
>>
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>> If you haven't heard within a week you really should try again.
>>
>> --
>
> http://carlboettiger.info
>
>
> --
> Professor Carole Goble CBE FREng FBCS CITP
> School of Computer Science
> University of Manchester
> Manchester, UK
>
> tel: +44 161 275 6195 <+44%20161%20275%206195>
> email: carole.goble@manchester.ac.uk
> twitter: @CaroleAnneGoble
> PA: Melanie Price <melanie.j.price@manchester.ac.uk> <melanie.j.price@manchester.ac.uk>
>
> PLEASE NOTE: I no longer work weekends. You will not get a response.
>
> email etiquette:
> I get a lot of email and when I travel it gets even more backed up.
>
> - Don't get too upset if my replies are short (see http://www.phdcomics.com/comics/archive.php?comicid=1047)
> - If you don't get a reply within 48 hours there is a good chance the email has scrolled into the distance. If its urgent try again or email melanie.price@manchester.ac.uk.
> If you haven't heard within a week you really should try again.
>
>
>
> --

http://carlboettiger.info
Received on Tuesday, 10 April 2018 16:01:14 UTC

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